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ENH: add pavian as a visualization option for Kraken 2 results #90

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misialq opened this issue Oct 19, 2023 · 0 comments
Open

ENH: add pavian as a visualization option for Kraken 2 results #90

misialq opened this issue Oct 19, 2023 · 0 comments
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enhancement New feature or request

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@misialq
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misialq commented Oct 19, 2023

Currently, there is only one way to visualize the results obtained from Kraken 2 - taxa barplot. Also, this only works for reads (for now). It would be nice to bring in some more Kraken 2-specific visualizers which could leverage Kraken 2 reports directly and enable visualization fo results from both, reads and MAGs. One of such tools is pavian.

Notes:

  • there seems to be conda package available on bioconda but only for Linux platform
  • this is an interactive visualizer - would it be possible to pre-load our reports in the QIIME visualization directly? otherwise this cannot really work
@misialq misialq added the enhancement New feature or request label Oct 19, 2023
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