less typos/spaghetti-english

docs/MnSi.rst

@@ -5,6 +5,9 @@ This example will guide you through the experimental investigation conducted
 by Amato et al. and Dalmas de Réotier et. al reported in the following journal
 articles [Amato2014]_, [DalmasdeReotier2016]_.
 
+For the complete code see `run_example.py` in the `MnSi` the examples directory
+of the muesr package (or open it `on github <https://github.com/bonfus/muesr/blob/master/examples/MnSi/run_example.py>`_).
+
 .. note::  This is an advanced example. It is assumed that you already
            familiarized with Muesr by following one of the other examples
            or the tutorial.
@@ -173,16 +176,17 @@ phase between the helices in the Mn sites belonging to the two crystallographic
 orbits (see [DalmasdeReotier2016]_).
 This last parameter strongly influence the results.
 
-Here we define a phase shift :math:`\phi=2` degrees as reported in the article 
+Here we define a phase shift of :math:`\phi=2` degrees as reported in the article 
 mentioned above.
 
 
 .. literalinclude:: ../examples/MnSi/run_example.py
-   :lines: 293-231
+   :lines: 293-311
    :lineno-start: 293
    :emphasize-lines: 1,11
    :language: python
 
+
 Repeating the same procedure discussed above leads to the following 
 comparison between the magnetic structures with :math:`\phi=0` (blue) and 
 and :math:`\phi=2` deg (orange).

examples/MnSi/run_example.py

@@ -274,7 +274,7 @@ def uv(vec):
 ax1.set_title('right-handed')
 ax2.set_title('left-handed')
 
-# replot old results fro perfect field to compare later
+# replot previous results for later comparison
 ax1.plot(mid_of_bin, RH_Hist, label = 'original')
 ax2.plot(mid_of_bin, LH_Hist, label = 'original')
 
@@ -328,7 +328,7 @@ def uv(vec):
 s.current_mm_idx = 4;
 r_LH = locfield(s, 'i',[50,50,50],100,nnn=3,nangles=36000)
 
-
+# set hyperfine coupling for all 4 muon positions.
 for i in range(4):
     r_RH[i].ACont = ContatExp
     r_LH[i].ACont = ContatExp