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Added LiFePO4 example
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269 changes: 269 additions & 0 deletions examples/LiFePO4/cifs/4001848.cif
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#------------------------------------------------------------------------------
#$Date: 2013-12-13 16:53:45 +0000 (Fri, 13 Dec 2013) $
#$Revision: 91654 $
#$URL: file:///home/coder/svn-repositories/cod/cif/4/00/18/4001848.cif $
#------------------------------------------------------------------------------
#
# This file is available in the Crystallography Open Database (COD),
# http://www.crystallography.net/
#
# All data on this site have been placed in the public domain by the
# contributors.
#
data_4001848
loop_
_publ_author_name
'Janssen, Yuri'
'Santhanagopalan, Dhamodaran'
'Qian, Danna'
'Chi, Miaofang'
'Wang, Xiaoping'
'Hoffmann, Christina'
'Meng, Ying Shirley'
'Khalifah, Peter G.'
_publ_section_title
;
Reciprocal Salt Flux Growth of LiFePO4Single Crystals with Controlled
Defect Concentrations
;
_journal_issue 22
_journal_name_full 'Chemistry of Materials'
_journal_page_first 4574
_journal_paper_doi 10.1021/cm4027682
_journal_volume 25
_journal_year 2013
_chemical_formula_moiety 'Li1 Fe1 P1 O4'
_chemical_formula_sum 'Fe Li O4 P'
_chemical_formula_weight 157.8
_space_group_IT_number 62
_symmetry_cell_setting orthorhombic
_symmetry_Int_Tables_number 62
_symmetry_space_group_name_Hall '-P 2ac 2n'
_symmetry_space_group_name_H-M 'P n m a'
_audit_creation_method 'Jana2006 Version : 04/04/2013'
_cell_angle_alpha 90
_cell_angle_beta 90
_cell_angle_gamma 90
_cell_formula_units_Z 4
_cell_length_a 10.3244(2)
_cell_length_b 6.0064(3)
_cell_length_c 4.6901(5)
_cell_measurement_reflns_used 11430
_cell_measurement_temperature 293
_cell_measurement_theta_max 45.53
_cell_measurement_theta_min 3.38
_cell_volume 290.84(3)
_computing_cell_refinement
;
CrysAlisPro, Agilent Technologies,
Version 1.171.35.19 (release 27-10-2011 CrysAlis171 .NET)
(compiled Oct 27 2011,15:02:11)
;
_computing_data_collection
;
CrysAlisPro, Agilent Technologies,
Version 1.171.35.19 (release 27-10-2011 CrysAlis171 .NET)
(compiled Oct 27 2011,15:02:11)
;
_computing_data_reduction
;
CrysAlisPro, Agilent Technologies,
Version 1.171.35.19 (release 27-10-2011 CrysAlis171 .NET)
(compiled Oct 27 2011,15:02:11)
;
_diffrn_ambient_temperature 293
_diffrn_detector_area_resol_mean 10.4962
_diffrn_measured_fraction_theta_full 0.99
_diffrn_measured_fraction_theta_max 0.99
_diffrn_measurement_device 'four-cycle diffractometer'
_diffrn_measurement_device_type 'Xcalibur, Atlas, Gemini'
_diffrn_measurement_method '\w scans'
_diffrn_radiation_monochromator graphite
_diffrn_radiation_probe x-ray
_diffrn_radiation_source 'Enhance (Mo) X-ray Source'
_diffrn_radiation_type 'Mo K\a'
_diffrn_radiation_wavelength 0.7107
_diffrn_reflns_av_R_equivalents 0.0367
_diffrn_reflns_av_sigmaI/netI 0.0119
_diffrn_reflns_limit_h_max 20
_diffrn_reflns_limit_h_min -20
_diffrn_reflns_limit_k_max 12
_diffrn_reflns_limit_k_min -12
_diffrn_reflns_limit_l_max 9
_diffrn_reflns_limit_l_min -9
_diffrn_reflns_number 23031
_diffrn_reflns_theta_full 45.64
_diffrn_reflns_theta_max 45.64
_diffrn_reflns_theta_min 3.95
_exptl_absorpt_coefficient_mu 5.524
_exptl_absorpt_correction_T_max 0.449
_exptl_absorpt_correction_T_min 0.322
_exptl_absorpt_correction_type analytical
_exptl_absorpt_process_details
;
CrysAlisPro, Agilent Technologies,
Version 1.171.35.19 (release 27-10-2011 CrysAlis171 .NET)
(compiled Oct 27 2011,15:02:11)
Analytical numeric absorption correction using a multifaceted crystal
model based on expressions derived by R.C. Clark & J.S. Reid.
(Clark, R. C. & Reid, J. S. (1995). Acta Cryst. A51, 887-897)
;
_exptl_crystal_density_diffrn 3.6523
_exptl_crystal_F_000 308
_exptl_crystal_size_max 0.299
_exptl_crystal_size_mid 0.28
_exptl_crystal_size_min 0.235
_refine_diff_density_max 0.62
_refine_diff_density_min -0.36
_refine_ls_extinction_coef 8750(190)
_refine_ls_extinction_method
'B-C type 1 Lorentzian isotropic (Becker & Coppens, 1974)'
_refine_ls_goodness_of_fit_gt 1.42
_refine_ls_goodness_of_fit_ref 1.38
_refine_ls_number_constraints 0
_refine_ls_number_parameters 46
_refine_ls_number_reflns 1312
_refine_ls_number_restraints 0
_refine_ls_R_factor_all 0.0178
_refine_ls_R_factor_gt 0.0154
_refine_ls_shift/su_max 0.0135
_refine_ls_shift/su_mean 0.0028
_refine_ls_structure_factor_coef Fsqd
_refine_ls_weighting_details w=1/(\s^2^(I)+0.0004I^2^)
_refine_ls_weighting_scheme sigma
_refine_ls_wR_factor_gt 0.0413
_refine_ls_wR_factor_ref 0.0421
_reflns_number_gt 1198
_reflns_number_total 1312
_reflns_threshold_expression I>3\s(I)
_[local]_cod_data_source_file cm4027682_si_002.cif
_[local]_cod_data_source_block X9_occupancies_free
_[local]_cod_chemical_formula_sum_orig 'Fe1 Li1 O4 P1'
_cod_depositor_comments
;
The following automatic conversions were performed:

'_diffrn_radiation_probe' value 'X-ray' changed to 'x-ray' according
to /home/saulius/struct/CIF-dictionaries/cif_core.dic dictionary
named 'cif_core.dic' version 2.4.2 from 2011-04-26.

Automatic conversion script
Id: cif_fix_values 1891 2012-01-12 08:04:46Z andrius
;
_cod_database_code 4001848
loop_
_symmetry_equiv_pos_site_id
_symmetry_equiv_pos_as_xyz
1 x,y,z
2 -x+1/2,-y,z+1/2
3 -x,y+1/2,-z
4 x+1/2,-y+1/2,-z+1/2
5 -x,-y,-z
6 x+1/2,y,-z+1/2
7 x,-y+1/2,z
8 -x+1/2,y+1/2,z+1/2
loop_
_atom_site_label
_atom_site_type_symbol
_atom_site_fract_x
_atom_site_fract_y
_atom_site_fract_z
_atom_site_adp_type
_atom_site_U_iso_or_equiv
_atom_site_site_symmetry_mutiplicity
_atom_site_occupancy
_atom_site_calc_flag
Fe1 Fe 0.282201(11) 0.25 0.97474(3) Uani 0.00667(3) 4 1.0040(16) d
P1 P 0.094860(19) 0.25 0.41822(4) Uani 0.00522(5) 4 1 d
O1 O 0.09695(6) 0.25 0.74277(12) Uani 0.00891(13) 4 1.025(3) d
O2 O 0.45715(6) 0.25 0.20605(13) Uani 0.00879(13) 4 1.030(3) d
O3 O 0.16556(4) 0.04652(7) 0.28486(9) Uani 0.00912(9) 8 1.035(3) d
Li1 Li 0 0 0 Uani 0.0166(6) 4 1.000(15) d
loop_
_atom_site_aniso_label
_atom_site_aniso_type_symbol
_atom_site_aniso_U_11
_atom_site_aniso_U_22
_atom_site_aniso_U_33
_atom_site_aniso_U_12
_atom_site_aniso_U_13
_atom_site_aniso_U_23
Fe1 Fe 0.00642(5) 0.00595(5) 0.00765(5) 0 0.00037(3) 0
P1 P 0.00551(8) 0.00552(8) 0.00462(8) 0 0.00018(5) 0
O1 O 0.0105(3) 0.0109(2) 0.00533(19) 0 -0.00012(15) 0
O2 O 0.0065(2) 0.0112(2) 0.0087(2) 0 0.00036(15) 0
O3 O 0.01126(18) 0.00747(15) 0.00862(15) 0.00237(11) 0.00146(11) 0.00023(11)
Li1 Li 0.0200(11) 0.0154(10) 0.0142(9) -0.0029(7) -0.0022(6) -0.0037(6)
loop_
_atom_type_symbol
_atom_type_scat_dispersion_real
_atom_type_scat_dispersion_imag
_atom_type_scat_source
Fe 0.3463 0.8444 'International Tables Vol C tables 4.2.6.8 and 6.1.1.1'
Li -0.0003 0.0001 'International Tables Vol C tables 4.2.6.8 and 6.1.1.1'
O 0.0106 0.0060 'International Tables Vol C tables 4.2.6.8 and 6.1.1.1'
P 0.1023 0.0942 'International Tables Vol C tables 4.2.6.8 and 6.1.1.1'
loop_
_geom_angle_atom_site_label_1
_geom_angle_atom_site_label_2
_geom_angle_atom_site_label_3
_geom_angle_site_symmetry_1
_geom_angle_site_symmetry_3
_geom_angle
O1 Fe1 O2 . 1_556 178.64(2)
O1 Fe1 O3 . 1_556 81.627(17)
O1 Fe1 O3 . 2_555 90.791(14)
O1 Fe1 O3 . 7_556 81.627(17)
O1 Fe1 O3 . 8_555 90.791(14)
O2 Fe1 O3 1_556 1_556 97.237(18)
O2 Fe1 O3 1_556 2_555 89.895(15)
O2 Fe1 O3 1_556 7_556 97.237(18)
O2 Fe1 O3 1_556 8_555 89.895(15)
O3 Fe1 O3 1_556 2_555 87.134(16)
O3 Fe1 O3 1_556 7_556 65.824(16)
O3 Fe1 O3 1_556 8_555 152.645(16)
O3 Fe1 O3 2_555 7_556 152.645(16)
O3 Fe1 O3 2_555 8_555 119.383(18)
O3 Fe1 O3 7_556 8_555 87.134(16)
O1 P1 O2 . 4_455 113.10(3)
O1 P1 O3 . . 113.30(2)
O1 P1 O3 . 7_555 113.30(2)
O2 P1 O3 4_455 . 106.37(2)
O2 P1 O3 4_455 7_555 106.37(2)
O3 P1 O3 . 7_555 103.63(2)
O1 Li1 O1 1_554 3_546 180.0(5)
O1 Li1 O2 1_554 2_554 91.881(17)
O1 Li1 O2 1_554 4_455 88.119(17)
O1 Li1 O3 1_554 . 83.729(19)
O1 Li1 O3 1_554 5_555 96.271(19)
O1 Li1 O2 3_546 2_554 88.119(17)
O1 Li1 O2 3_546 4_455 91.881(17)
O1 Li1 O3 3_546 . 96.271(19)
O1 Li1 O3 3_546 5_555 83.729(19)
O2 Li1 O2 2_554 4_455 180.0(5)
O2 Li1 O3 2_554 . 109.261(19)
O2 Li1 O3 2_554 5_555 70.739(19)
O2 Li1 O3 4_455 . 70.739(19)
O2 Li1 O3 4_455 5_555 109.261(19)
O3 Li1 O3 . 5_555 180.0(5)
loop_
_geom_bond_atom_site_label_1
_geom_bond_atom_site_label_2
_geom_bond_site_symmetry_2
_geom_bond_distance
Fe1 O1 . 2.2004(6)
Fe1 O2 1_556 2.1070(6)
Fe1 O3 1_556 2.2493(5)
Fe1 O3 2_555 2.0630(4)
Fe1 O3 7_556 2.2493(5)
Fe1 O3 8_555 2.0630(4)
P1 O1 . 1.5223(7)
P1 O2 4_455 1.5367(6)
P1 O3 . 1.5549(4)
P1 O3 7_555 1.5549(4)
Li1 O1 1_554 2.1708(5)
Li1 O1 3_546 2.1708(5)
Li1 O2 2_554 2.0860(5)
Li1 O2 4_455 2.0860(5)
Li1 O3 . 2.1874(4)
Li1 O3 5_555 2.1874(4)

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