PIQMEE (Phylodynamic Inference of Quasispecies Molecular Evolution and Epidemiology)

PIQMEE is a BEAST 2 package allowing for fast inference of phylodynamics from dataset containing many sequence duplicates.

License

This software is free (as in freedom). You are welcome to use it, modify it, and distribute your modified versions provided you extend the same courtesy to users of your modified version. Specifically, it is made available under the terms of the GNU General Public License version 3, which is contained in his directory in the file named COPYING.

Acknowledgements

Work on this project is made possible by the support of the following institutions/grants:

• ETH Zurich

• SIB Zurich

• University of Vienna

• European Research Council under the Seventh Framework Programme of the European Commission (PhyPD: grant agreement number 335529)

• Swiss National Science foundation (Early PostDoc mobility grant P2EZP3_184543)

Citation

Veronika Boskova, Tanja Stadler, PIQMEE: Bayesian phylodynamic method for analysis of large datasets with duplicate sequences, Molecular Biology and Evolution, msaa136, https://doi.org/10.1093/molbev/msaa136