Merging in API changes, etc. #185

gkiar · 2017-12-07T02:59:43Z

(long overdue PR)

updated documentation/readme
added contributors guide
new consistent API (!!!!!!)
various bug fixes

…o example

Added neurolinks template to package

Changed API class into a module

Update and Centralization of API

updated readme, added contributions

fixed bugs in singularity exec

removed -n option with random generation

…develop

changed shell to /bin/sh

return exit_code in execute was not tabbed properly, so bosh was not checking for all of the output files.

Fixed a bug in localExec.py preventing all outputs from being checked

coveralls · 2017-12-07T03:04:31Z

Coverage increased (+2.8%) to 84.099% when pulling cb679e7 on develop into 9ef1cbf on master.

gkiar and others added 30 commits October 2, 2017 12:21

began updates and centralization of API

8640bb2

Merge branch 'develop' of github.com:boutiques/boutiques into api-dev

2298a28

updated exec function with new API

4a92876

removed old print statment, undid accidental commit of invoc schema t…

60d2e9c

…o example

updated publisher with new bosh api

cd622d7

added tests for bosh api helpers

b6a06f7

added invocation, and import to new api script; updated tests

f3a82d0

made import interface more consistent

9f4c8ea

updated name of boutiques endpoints to boutiques tools

fa054ba

Added neurolinks template to package

76293fd

updated python interface to avoid lists

312c5c9

Merge pull request #161 from glatard/develop

7171b70

Added neurolinks template to package

Merge branch 'develop' of github.com:boutiques/boutiques into api-dev

4a0f166

rolled version (havent yet pushed to pypi)

6e8c32d

Put API functions in a module rather than a class

160919f

Put API functions in a module rather than a class

bb61c56

Re-introduced --changeUser in bosh exec.

35226b0

made interface for exec and simulate more intuitive

6395a59

Merge branch 'api-dev' into api-dev

405f03a

Merge pull request #5 from glatard/api-dev

dd8f7ea

Changed API class into a module

Merge pull request #159 from gkiar/api-dev

ad499fe

Update and Centralization of API

updated readme, added contributions

cf73b38

Update CONTRIBUTING.md

33f33e9

Merge pull request #163 from gkiar/gk-dev

3897854

updated readme, added contributions

minor formatting I missed in the PR

771c4cb

fixed bugs in singularity exec

474bbdc

upgraded setuptools in travis config

aa15b1b

Merge pull request #170 from ValHayot/singularity

e0ebb73

fixed bugs in singularity exec

removed -n option with random generation

d900f98

Merge pull request #171 from gkiar/gk-dev

d18e465

removed -n option with random generation

shots47s and others added 8 commits November 24, 2017 15:03

eliminated the need for the pwd when running in windows

bd3b869

Added hermes.json

9923c6c

Merge branch 'develop' of https://github.com/shots47s/boutiques into …

69d06b6

…develop

Removed extraneous file.

779bc56

Changed /bin/bash to /bin/sh

d6f0b15

Merge pull request #182 from shots47s/develop

ec64df2

changed shell to /bin/sh

BugFix:

58f29b1

return exit_code in execute was not tabbed properly, so bosh was not checking for all of the output files.

Merge pull request #184 from shots47s/develop

cb679e7

Fixed a bug in localExec.py preventing all outputs from being checked

gkiar requested a review from glatard December 7, 2017 02:59

glatard merged commit cc83de3 into master Dec 10, 2017

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Merging in API changes, etc. #185

Merging in API changes, etc. #185

gkiar commented Dec 7, 2017

coveralls commented Dec 7, 2017 •

edited

Merging in API changes, etc. #185

Merging in API changes, etc. #185

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gkiar commented Dec 7, 2017

coveralls commented Dec 7, 2017 • edited

coveralls commented Dec 7, 2017 •

edited