Skip to content

Commit

Permalink
Merge pull request #59 from giovannivolpe/eg-56-AdditionalAtlases
Browse files Browse the repository at this point in the history
Additional atlases
  • Loading branch information
giovannivolpe committed Jun 19, 2023
2 parents ce362e2 + a1b4a1c commit d537a4e
Show file tree
Hide file tree
Showing 8 changed files with 271 additions and 1 deletion.
2 changes: 1 addition & 1 deletion braph2genesis/atlases/desikan_atlas.txt
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
Desikan_Freesurfer_v5.1
Desikan_Freesurfer
Desikan Label
Desikan Notes

Expand Down
Binary file modified braph2genesis/atlases/desikan_atlas.xlsx
Binary file not shown.
86 changes: 86 additions & 0 deletions braph2genesis/atlases/desikan_subcortical_atlas.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,86 @@
Desikan_withSubcortical
Desikan_withSubcortical Label
Desikan_withSubcortical Notes

lSF superiorfrontal -12.6 22.9 42.4 left
lFP frontalpole -8.6 61.7 -8.7 left
lRMF rostralmiddlefrontal -31.3 41.2 16.5 left
lCMF caudalmiddlefrontal -34.6 10.2 42.8 left
lPOB parsorbitalis -41 38.8 -11.1 left
lLOF lateralorbitofrontal -24 28.6 -14.4 left
lPT parstriangularis -42.4 30.6 2.3 left
lPOP parsopercularis -44.6 14.6 13.1 left
lMOF medialorbitofrontal -8 34.9 -14.9 left
lRAC rostralanteriorcingulate -6.8 33.9 1.6 left
lCAC caudalanteriorcingulate -6.6 18 26.1 left
lINS insula -34.2 -4.3 2.2 left
lPRC precentral -37.8 -10.7 42.1 left
lPOC postcentral -42.3 -23.8 43.6 left
lSUPRA supramarginal -50.4 -38.8 31 left
lSP superiorparietal -22.8 -60.9 46.3 left
lIP inferiorparietal -40 -66.4 27.3 left
lPARA paracentral -10 -28.7 56.1 left
lPCG posteriorcingulate -7.3 -17.4 35.7 left
lIST isthmuscingulate -9.8 -44.8 16.9 left
lPREC precuneus -11.6 -57.5 36.7 left
lCUN cuneus -8.7 -79.6 18 left
lPERI pericalcarine -13.9 -80.6 6 left
lLIN lingual -16.5 -66.8 -4.3 left
lLO lateraloccipital -29.7 -86.9 -1 left
lTRANS transversetemporal -44 -24.2 6 left
lBKS bankssts -52.7 -44.5 4.6 left
lST superiortemporal -52.1 -17.8 -4.4 left
lMT middletemporal -55.6 -31.1 -12.9 left
lIT inferiortemporal -48.9 -34.4 -22.2 left
lTP temporalpole -32.8 8.4 -34.8 left
lENT entorhinal -25.8 -7.6 -31.6 left
lPHIP parahippocampal -24.7 -31.2 -17.4 left
lFUS fusiform -35.7 -43.3 -19.7 right
rSF superiorfrontal 13.4 24.7 42 right
rFP frontalpole 10.3 61.1 -10 right
rCAC caudalanteriorcingulate 7.3 18.7 26.3 right
rCMF caudalmiddlefrontal 34.9 11.8 43 right
rPOB parsorbitalis 42.1 39.2 -10 right
rLOF lateralorbitofrontal 23.6 28.5 -15.2 right
rPT parstriangularis 45 29.7 4.5 right
rPOP parsopercularis 44.9 14.4 14.2 right
rMOF medialorbitofrontal 8.8 35.7 -14.8 right
rRMF rostralmiddlefrontal 32.3 40.9 17.3 right
rRAC rostralanteriorcingulate 8 33.5 2.1 right
rINS insula 35.1 -3.9 2.4 right
rPRC precentral 36.8 -9.9 43.5 right
rPOC postcentral 41.6 -22.4 43.8 right
rSUPRA supramarginal 50.6 -33.3 30.7 right
rSP superiorparietal 22.6 -59.5 48.1 right
rIP inferiorparietal 42.8 -60.9 28.1 right
rPARAC paracentral 9.9 -27.4 55.6 right
rPCG posteriorcingulate 7.6 -17.1 36.2 right
rIST isthmuscingulate 8.9 -45.4 17.6 right
rPREC precuneus 11.7 -56.5 37.7 right
rCUN cuneus 8.7 -80.1 19 right
rPERI pericalcarine 14 -79.7 6.7 right
rLIN lingual 16.8 -66.3 -3.6 right
rLO lateraloccipital 30.3 -86.3 0.5 right
rTRANS transversetemporal 44.8 -22.4 6.5 right
rBKS bankssts 51.9 -40.6 5.6 right
rST superiortemporal 53 -14 -5.5 right
rMT middletemporal 55.9 -29.5 -12.9 right
rIT inferiortemporal 49.3 -31.7 -23 right
rTP temporalpole 34 8.4 -33.1 right
rENT entorhinal 26.2 -6.8 -31.9 right
rPHIP parahippocampal 26.1 -31.3 -16.2 right
rFUS fusiform 35.9 -43 -19.2 right
lThal left_thalamus -11.75 -19.88 5.17 left
lCaud left_caudate -15.03 9.44 6.91 left
lPut left_putamen -26.37 -0.16 -2.09 left
lPal left_pallidum -20.92 -5.19 -2.41 left
lHip left_hippocampus -26.09 -24.43 -15.15 left
lAmy left_amygdala -23.91 -7.34 -20.64 left
lAcc left_accumbens -9.63 10.96 -8.79 left
rThal right_thalamus 12.49 -19.23 5.66 right
rCaud right_caudate 16.16 9.46 8.24 right
rPut right_putamen 26.94 0.55 -2.25 right
rPal right_pallidum 22.11 -4.94 -1.95 right
rHip right_hippocampus 27.74 -23.38 -14.99 right
rAmy right_amygdala 24.94 -6.01 -20.74 right
rAcc right_accumbens 9.99 10.42 -8.27 right
Binary file not shown.
166 changes: 166 additions & 0 deletions braph2genesis/atlases/destrieux_subcortical_atlas.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,166 @@
Destrieux_withSubcortical
Destrieux Label_withSubcortical
Destrieux_withSubcortical Notes

lSubCa lh_G_subcallosal_thickness -5.8 16 -8.9 left
lsOMO lh_S_orbital_medolfact_thickness -12.9 24.8 -17.8 left
lOrb lh_G_orbital_thickness -27.6 32.9 -16.3 left
lsOHS lh_S_orbitalH_Shaped_thickness -25.5 34.8 -12.2 left
lFM lh_G_and_S_frontomargin_thickness -23.6 53.8 -5.9 left
lTrFP lh_G_and_S_transv_frontopol_thickness -15 61.2 0.3 left
lsSubo lh_S_suborbital_thickness -8.8 38.1 -10.8 left
lRect lh_G_rectus_thickness -6 36.2 -19.6 left
lCAnt lh_G_and_S_cingulAnt_thickness 10.3 39 8.9 left
lCMidAnt lh_G_and_S_cingulMidAnt_thickness -9.5 14.1 36.1 left
lFSup lh_G_front_sup_thickness -10.6 20.9 46.5 left
lsFM lh_S_front_middle_thickness -26.9 42.3 18.9 left
lsFS lh_S_front_sup_thickness -23.3 18.6 42.9 left
lFMid lh_G_front_middle_thickness -37.9 27.3 32.8 left
lsFI lh_S_front_inf_thickness -38.3 23.4 21 left
lsOL lh_S_orbital_lateral_thickness -40 41.3 -2.4 left
lFITr lh_G_front_infTriangul_thickness -48.4 29.8 4 left
lFIOr lh_G_front_infOrbital_thickness -42.9 31.6 -10 left
lLFAH lh_Lat_FisantHorizont_thickness -38.5 32.4 -3.1 left
lsCIA lh_S_circular_insula_ant_thickness -28.7 21.8 -9.3 left
lLFAV lh_Lat_FisantVertical_thickness -43.4 21.8 8.1 left
lsCIS lh_S_circular_insula_sup_thickness -35.3 6 11.6 left
lInsS lh_G_insular_short_thickness -34.6 8.2 -2.7 left
lInsC lh_G_Ins_lg_and_S_cent_ins_thickness -36.2 -7.3 -1.2 left
lFIOp lh_G_front_infOpercular_thickness -49.2 11 9.4 left
lsPIP lh_S_precentralinfpart_thickness -43.3 3.3 26.9 left
lPrece lh_G_precentral_thickness -40.7 -9.8 50 left
lsCen lh_S_central_thickness -35.4 -21 44.8 left
lsPSP lh_S_precentralsuppart_thickness -11.75 -19.88 5.17 left
lParac lh_G_and_S_paracentral_thickness -9.1 -33.9 66.7 left
lCPostVent lh_G_cingulPostventral_thickness -9.7 -47.5 5.7 left
lCMidPost lh_G_and_S_cingulMidPost_thickness -9.4 -11.3 40.7 left
lsPeri lh_S_pericallosal_thickness -5.8 -8.2 21.2 left
lSubc lh_G_and_S_subcentral_thickness -55.3 -11.4 15.9 left
lsCII lh_S_circular_insula_inf_thickness -40.2 -13.7 -7.8 left
lTSTr lh_G_temp_supG_T_transv_thickness -47.5 -20.3 4.9 left
lsTTr lh_S_temporal_transverse_thickness -50.3 -25.2 2.5 left
lTSPt lh_G_temp_supPlan_tempo_thickness -56.6 -39.3 16.5 left
lLFP lh_Lat_Fispost_thickness -39.9 -34 17.2 left
lPIS lh_G_pariet_infSupramar_thickness -54.7 -37.2 31.8 left
lPost lh_G_postcentral_thickness -43.4 -25.2 53.1 left
lsPost lh_S_postcentral_thickness -37.4 -35.4 44.1 left
lPSup lh_G_parietal_sup_thickness -20.4 -59.7 56.5 left
lPrecu lh_G_precuneus_thickness -7.8 -58 42.8 left
lsSubp lh_S_subparietal_thickness -11.2 -49.2 35.3 left
lCPostDor lh_G_cingulPostdorsal_thickness -5.4 -37.6 30.2 left
lsIPT lh_S_intrapariet_and_P_trans_thickness -29.5 -57.9 39.1 left
lPIA lh_G_pariet_infAngular_thickness -42.9 -64.7 36.1 left
lsIPJ lh_S_interm_primJensen_thickness -50.2 -52.3 30.3 left
lsTS lh_S_temporal_sup_thickness -47.8 -44.2 5.5 left
lTSL lh_G_temp_supLateral_thickness -58 -16.9 -3.2 left
lTSPp lh_G_temp_supPlan_polar_thickness -39.8 2.8 -23.1 left
lPT lh_Pole_temporal_thickness -35.4 3.6 -36.9 left
lsTI lh_S_temporal_inf_thickness -53.1 -25.2 -22.3 left
lTM lh_G_temporal_middle_thickness -58.1 -33.9 -11.8 left
lTI lh_G_temporal_inf_thickness -50.8 -36.1 -23.3 left
lsCTA lh_S_collat_transv_ant_thickness -40.9 -22.1 -25.3 left
lOTMP lh_G_octemp_medParahip_thickness -24.4 -19.9 -24.4 left
lOTML lh_G_octemp_medLingual_thickness -11.6 -72.7 -4.7 left
lOTLF lh_G_octemp_latfusifor_thickness -35.3 -53.8 -18.3 left
lsOTL lh_S_octemp_lat_thickness -42.7 -50.5 -14.2 left
lsOA lh_S_occipital_ant_thickness -42.5 -68.2 1.4 left
lOInf lh_G_and_S_occipital_inf_thickness -37 -80.8 -11.2 left
lOMid lh_G_occipital_middle_thickness -38.5 -82.8 10.5 left
lsOST lh_S_oc_sup_and_transversal_thickness -27 -80.4 17.7 left
lsOML lh_S_oc_middle_and_Lunatus_thickness -31 -85.7 3.7 left
lPO lh_Pole_occipital_thickness -18.2 -96.9 -3.9 left
lOSup lh_G_occipital_sup_thickness -14.8 -88.1 26.4 left
lCun lh_G_cuneus_thickness -6.3 -82.8 16.8 left
lsPO lh_S_parieto_occipital_thickness -16.1 -67.9 23.4 left
lsCal lh_S_calcarine_thickness -17.4 -67.1 4.6 left
lsCM lh_S_cingulMarginalis_thickness -14.6 -37.1 46.5 left
lsOTML lh_S_octemp_med_and_Lingual_thickness -29.7 -48.6 -11 left
lsCTP lh_S_collat_transv_post_thickness -24.7 -78.9 -7.7 left
rSubCa rh_G_subcallosal_thickness 6.9 15.4 -11.9 right
rsOMO rh_S_orbital_medolfact_thickness 13.9 23.9 -17 right
rOrb rh_G_orbital_thickness 32.8 12.4 -11.8 right
rsOHS rh_S_orbitalH_Shaped_thickness 25.6 35.1 -12.4 right
rFM rh_G_and_S_frontomargin_thickness 22.6 55.3 -8.3 right
rTrFP rh_G_and_S_transv_frontopol_thickness 16.5 61 1.8 right
rsSubo rh_S_suborbital_thickness 8.8 40.3 -13.4 right
rRect rh_G_rectus_thickness 6.8 33.9 -19.9 right
rCAnt rh_G_and_S_cingulAnt_thickness 11.1 38.7 7.9 right
rCMidAnt rh_G_and_S_cingulMidAnt_thickness 10 15.2 36.4 right
rFSup rh_G_front_sup_thickness 11.2 22.6 46.9 right
rsFM rh_S_front_middle_thickness 28.8 40.4 21.1 right
rsFS rh_S_front_sup_thickness 23.9 18.6 44.1 right
rFMid rh_G_front_middle_thickness 38.6 29.1 31.8 right
rsFI rh_S_front_inf_thickness 39 24.9 21 right
rsOL rh_S_orbital_lateral_thickness 41.8 40 -2 right
rFITr rh_G_front_infTriangul_thickness 50.7 28.5 7.5 right
rFIOr rh_G_front_infOrbital_thickness 46.9 32.8 -7.2 right
rLFAH rh_Lat_FisantHorizont_thickness 41.1 29.6 2.2 right
rsCIA rh_S_circular_insula_ant_thickness -33.7 11.9 -11.1 right
rLFAV rh_Lat_FisantVertical_thickness 45.3 21.3 9.3 right
rsCIS rh_S_circular_insula_sup_thickness 35.9 6.9 11.2 right
rInsS rh_G_insular_short_thickness 36 9 -2.1 right
rInsC rh_G_Ins_lg_and_S_cent_ins_thickness 37.2 -4.3 -3.5 right
rFIOp rh_G_front_infOpercular_thickness 50 9.1 9.1 right
rsPIP rh_S_precentralinfpart_thickness 42.7 5 27.9 right
rPrece rh_G_precentral_thickness 39.8 -8.9 50.6 right
rsCen rh_S_central_thickness 34.8 -19.8 45.1 right
rsPSP rh_S_precentralsuppart_thickness 26.7 -8.3 52.6 right
rParac rh_G_and_S_paracentral_thickness 7.7 -33.2 67 right
rCPostVent rh_G_cingulPostventral_thickness 10.1 -48.7 7.3 right
rCMidPost rh_G_and_S_cingulMidPost_thickness 9.3 -10 42.2 right
rsPeri rh_S_pericallosal_thickness 7 -8 21.7 right
rSubc rh_G_and_S_subcentral_thickness 54.9 -10.2 16.5 right
rsCII rh_S_circular_insula_inf_thickness 42 -12.3 -8.2 right
rTSTr rh_G_temp_supG_T_transv_thickness 48 -18.6 5.1 right
rsTTr rh_S_temporal_transverse_thickness 52.1 -22.5 4.7 right
rTSPp rh_G_temp_supPlan_polar_thickness 42.5 3.9 -21.5 right
rLFP rh_Lat_Fispost_thickness 39.7 -27.9 18.2 right
rPIS rh_G_pariet_infSupramar_thickness 55.9 -32 31.1 right
rPost rh_G_postcentral_thickness 43.6 -23.5 52.8 right
rsPost rh_S_postcentral_thickness 36.6 -33.1 45.6 right
rPSup rh_G_parietal_sup_thickness 21 -56.2 58.8 right
rPrecu rh_G_precuneus_thickness 8 -59.1 45.8 right
rsSubp rh_S_subparietal_thickness 10.8 -49.1 36.6 right
rCPostDor rh_G_cingulPostdorsal_thickness 5.5 -38.4 31 right
rsIPT rh_S_intrapariet_and_P_trans_thickness 29.8 -55.1 43.3 right
rPIA rh_G_pariet_infAngular_thickness 45.1 -60 38.2 right
rsIPJ rh_S_interm_primJensen_thickness 58.6 -41.5 15.6 right
rsTS rh_S_temporal_sup_thickness 48.4 -41.5 6.6 right
rTSL rh_G_temp_supLateral_thickness 59.3 -12.8 -3.7 right
rTSPt rh_G_temp_supPlan_tempo_thickness 57.9 -33.3 17 right
rPT rh_Pole_temporal_thickness 38.1 5.1 -36.3 right
rsTI rh_S_temporal_inf_thickness 53.2 -24.4 -22 right
rTM rh_G_temporal_middle_thickness 59.3 -31.6 -11.7 right
rTI rh_G_temporal_inf_thickness 52.1 -33.8 -23.8 right
rsCTA rh_S_collat_transv_ant_thickness 42.2 -20.8 -25.2 right
rOTMP rh_G_octemp_medParahip_thickness 25.9 -17.8 -24.8 right
rOTML rh_G_octemp_medLingual_thickness 12.6 -66.1 -3.6 right
rOTLF rh_G_octemp_latfusifor_thickness 34.6 -53 -17.5 right
rsOTL rh_S_octemp_lat_thickness 43.4 -50.5 -14 right
rsOA rh_S_occipital_ant_thickness 43.1 -65.7 3.7 right
rOInf rh_G_and_S_occipital_inf_thickness 40.9 -76.2 -10.4 right
rOMid rh_G_occipital_middle_thickness 39.2 -80.4 12.9 right
rsOST rh_S_oc_sup_and_transversal_thickness 28 -77.2 20.7 right
rsOML rh_S_oc_middle_and_Lunatus_thickness 33.2 -82.4 6.4 right
rPO rh_Pole_occipital_thickness 18.1 -94.4 -1.6 right
rOSup rh_G_occipital_sup_thickness 18.3 -84.6 30.3 right
rCun rh_G_cuneus_thickness 7.1 -80.2 18.6 right
rsPO rh_S_parieto_occipital_thickness 17.5 -66.4 25.3 right
rsCal rh_S_calcarine_thickness 19.1 -63.7 5 right
rsCM rh_S_cingulMarginalis_thickness 13.9 -36.9 47 right
rsOTML rh_S_octemp_med_and_Lingual_thickness 31.1 -47.3 -11.6 right
rsCTP rh_S_collat_transv_post_thickness 26.3 -78.4 -8.1 right
lThal left_thalamus -11.75 -19.88 5.17 left
lCaud left_caudate -15.03 9.44 6.91 left
lPut left_putamen -26.37 -0.16 -2.09 left
lPal left_pallidum -20.92 -5.19 -2.41 left
lHip left_hippocampus -26.09 -24.43 -15.15 left
lAmy left_amygdala -23.91 -7.34 -20.64 left
lAcc left_accumbens -9.63 10.96 -8.79 left
rThal right_thalamus 12.49 -19.23 5.66 right
rCaud right_caudate 16.16 9.46 8.24 right
rPut right_putamen 26.94 0.55 -2.25 right
rPal right_pallidum 22.11 -4.94 -1.95 right
rHip right_hippocampus 27.74 -23.38 -14.99 right
rAmy right_amygdala 24.94 -6.01 -20.74 right
rAcc right_accumbens 9.99 10.42 -8.27 right
Binary file not shown.
18 changes: 18 additions & 0 deletions braph2genesis/atlases/subcortical_atlas.txt
Original file line number Diff line number Diff line change
@@ -0,0 +1,18 @@
Subcortical_Freesurfer
Subcortical Label
Subcortical Notes

lThal left_thalamus -11.75 -19.88 5.17 left
lCaud left_caudate -15.03 9.44 6.91 left
lPut left_putamen -26.37 -0.16 -2.09 left
lPal left_pallidum -20.92 -5.19 -2.41 left
lHip left_hippocampus -26.09 -24.43 -15.15 left
lAmy left_amygdala -23.91 -7.34 -20.64 left
lAcc left_accumbens -9.63 10.96 -8.79 left
rThal right_thalamus 12.49 -19.23 5.66 right
rCaud right_caudate 16.16 9.46 8.24 right
rPut right_putamen 26.94 0.55 -2.25 right
rPal right_pallidum 22.11 -4.94 -1.95 right
rHip right_hippocampus 27.74 -23.38 -14.99 right
rAmy right_amygdala 24.94 -6.01 -20.74 right
rAcc right_accumbens 9.99 10.42 -8.27 right
Binary file added braph2genesis/atlases/subcortical_atlas.xlsx
Binary file not shown.

0 comments on commit d537a4e

Please sign in to comment.