use gray-scale in plot

brentp · Sep 4, 2013 · 9b32a2f · 9b32a2f
1 parent 87aecdd
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diff --git a/paper/manuscript-latex/document.tex b/paper/manuscript-latex/document.tex
@@ -71,10 +71,10 @@ \section{Methods}
 The most common use-case has been to annotate a list of intervals with any table from the UCSC genome-browser database. We provide an interface, by which, with a single command, a user can annotate a file of intervals with a list of tables present in the database. For gene-like tables, the output lists the nearest gene, and whether the interval overlaps an exon, intron, untranslated region, or other gene feature.
 
 \begin{figure}[!tpb]%figure1
-\centerline{\includegraphics[bb=0 0 216 216]{figure_1.eps}}
+\centerline{\includegraphics[bb=0 0 216 216]{figure1.eps}}
 \caption{Intervals annoted per second for a set of about 3,300 intervals using a local SQLite,
-local MySQL or remote (UCSC) MySQL instances for parallel SQL queries (red) or traditional, 
-serial queries (blue).
+local MySQL or remote (UCSC) MySQL instances for parallel SQL queries (light) or traditional, 
+serial queries (dark).
 }\label{fig:01}
 \end{figure}
 \end{methods}

diff --git a/paper/plot-timing.py b/paper/plot-timing.py
@@ -20,9 +20,11 @@
 x = 0.1 + np.arange(3)
 width = 0.35
 
-rects0 = ax.bar(x, 3327. / pt.time, width, color='r', edgecolor='r', alpha=0.91)
+
+rects0 = ax.bar(x, 3327. / pt.time, width, color='0.70', alpha=0.91)
+
 rects1 = ax.bar(x[:len(pf.time)] + width + 0.03, 3327. / pf.time, width,
-        color='b', edgecolor='b', alpha=0.91)
+        color='0.3', alpha=0.91)
 
 ax.set_xticks(x + width)
 ax.set_ylim(0, (3327. / min(pf.time)) + 50)