Unrecognised HGNC URI pattern

[ianwdunlop]

The pattern http://identifiers.org/hgnc/HGNC%253A29350 was found in a linkset but was not recognized by BridgeDB. However it does redirect to the correct place which suggests that identifiers.org does recognize it. So, either the pattern needs added to BridgeDB or the linkset file changed.
The URI looks like it has been escaped wrong in some way.

[egonw]

@ianwdunlop it comes from the http://bridgedb.org/data/linksets/release87/MusMusculus/Ensembl_Mm_dataset.void.ttl file, right?

@JonathanMELIUS, can you please check that file for HGNC%253Axxxx identifiers, and see if your code introduces that double escaped ':' and how we can solve that?

[ianwdunlop]

I found the pattern in http://bridgedb.org/data/linksets/release87/MusMusculus/Ensembl_Mm_hgnc.projection.LS.ttl
It may be in other files, I haven't looked

[egonw]

Bioregistry/Identifiers.org (via Bioregistry):

• hgnc.symbol: https://bioregistry.io/registry/hgnc.symbol
• hgnc: https://bioregistry.io/registry/hgnc

BridgeDb has both.

[egonw]

Closing this for now. So much has changed, and the IMS currently needs a lot of attention anyway, but still no funding for this.