Merge branch 'master' into jv

broadinstitute · Sep 25, 2017 · 8ca562c · 8ca562c
2 parents 328cade + f27885e
commit 8ca562c
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/cms/tools/selscan.py b/cms/tools/selscan.py
@@ -170,7 +170,7 @@ def process_vcf_into_selscan_tped(cls, vcf_file, gen_map_file, outfile_location,
                             genotypesCount            = len(previouslyCodedGenotypes)
                             countSpecificTpedName     = outTpedFile.replace(outfile_prefix, outfile_prefix + "_" + str(genotypesCount))
                             countSpecificMetafileName = outTpedMetaFile.replace(outfile_prefix, outfile_prefix + "_" + str(genotypesCount))
-                            with util.file.open_or_gzopen(countSpecificTpedName, 'a') as of1l, util.file.open_or_gzopen(countSpecificMetafileName, 'a') as of2l:
+                            with util.file.open_or_gzopen(countSpecificTpedName, 'at') as of1l, util.file.open_or_gzopen(countSpecificMetafileName, 'at') as of2l:
                                 of1l.write(lineToWrite1)
                                 of2l.write(lineToWrite2)