Merge pull request #224 from broadinstitute/ct-patch

CHROM -> #CHROM in vcf header read
broadinstitute · Dec 7, 2017 · aaeecdf · aaeecdf
2 parents b293084 + 4f3aba2
commit aaeecdf
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/cms/util/vcf_reader.py b/cms/util/vcf_reader.py
@@ -80,7 +80,7 @@ def sample_header_line(self):
         try:
             for line in headerIter:
                 line = str(line.decode("utf-8"))
-                if line.find("CHROM", 1) > 0:
+                if line.find("#CHROM", 1) > 0:
                     break
         except StopIteration:
             raise ValueError("Header not found in VCF file: {}".format(self.vcf_file_path))