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womtool graph germline.wdl I got an error:
womtool graph germline.wdl
wdl and version: germline.wdl(https://github.com/biowdl/germline-DNA/releases/download/v5.0.0/germline_v5.0.0.wdl) womtool:
# Name Version Build Channel _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_gnu conda-forge argcomplete 1.12.3 pyhd8ed1ab_0 conda-forge atomicwrites 1.4.1 pyhd8ed1ab_0 conda-forge attrs 23.1.0 pyh71513ae_1 conda-forge bcrypt 3.2.2 py310h5764c6d_1 conda-forge brotli-python 1.0.9 py310hd8f1fbe_9 conda-forge bullet-python 2.2.0 py310hff52083_6 conda-forge bzip2 1.0.8 h7f98852_4 conda-forge c-ares 1.19.1 hd590300_0 conda-forge ca-certificates 2023.7.22 hbcca054_0 conda-forge certifi 2023.7.22 pyhd8ed1ab_0 conda-forge cffi 1.15.1 py310h255011f_3 conda-forge charset-normalizer 3.2.0 pyhd8ed1ab_0 conda-forge colorama 0.4.6 pyhd8ed1ab_0 conda-forge coloredlogs 15.0.1 pyhd8ed1ab_3 conda-forge cromwell 0.40 1 bioconda cryptography 41.0.2 py310h75e40e8_0 conda-forge docker-py 6.1.3 pyhd8ed1ab_0 conda-forge exceptiongroup 1.1.2 pyhd8ed1ab_0 conda-forge expat 2.5.0 hcb278e6_1 conda-forge findutils 4.6.0 h166bdaf_1001 conda-forge font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge fontconfig 2.14.2 h14ed4e7_0 conda-forge freetype 2.12.1 hca18f0e_1 conda-forge gettext 0.21.1 h27087fc_0 conda-forge humanfriendly 10.0 py310hff52083_4 conda-forge idna 3.4 pyhd8ed1ab_0 conda-forge importlib-metadata 6.8.0 pyha770c72_0 conda-forge importlib_metadata 6.8.0 hd8ed1ab_0 conda-forge importlib_resources 6.0.0 pyhd8ed1ab_1 conda-forge iniconfig 2.0.0 pyhd8ed1ab_0 conda-forge jinja2 3.1.2 pyhd8ed1ab_1 conda-forge js2py 0.74 pyhd8ed1ab_0 conda-forge jsonschema 4.18.4 pyhd8ed1ab_0 conda-forge jsonschema-specifications 2023.7.1 pyhd8ed1ab_0 conda-forge keyutils 1.6.1 h166bdaf_0 conda-forge krb5 1.21.1 h659d440_0 conda-forge lark 1.1.7 pyhd8ed1ab_0 conda-forge ld_impl_linux-64 2.40 h41732ed_0 conda-forge libcurl 8.2.1 hca28451_0 conda-forge libdeflate 1.18 h0b41bf4_0 conda-forge libedit 3.1.20191231 he28a2e2_2 conda-forge libev 4.33 h516909a_1 conda-forge libexpat 2.5.0 hcb278e6_1 conda-forge libffi 3.4.2 h7f98852_5 conda-forge libgcc-ng 13.1.0 he5830b7_0 conda-forge libgomp 13.1.0 he5830b7_0 conda-forge libnghttp2 1.52.0 h61bc06f_0 conda-forge libnsl 2.0.0 h7f98852_0 conda-forge libpng 1.6.39 h753d276_0 conda-forge libsodium 1.0.18 h36c2ea0_1 conda-forge libsqlite 3.42.0 h2797004_0 conda-forge libssh2 1.11.0 h0841786_0 conda-forge libstdcxx-ng 13.1.0 hfd8a6a1_0 conda-forge libuuid 2.38.1 h0b41bf4_0 conda-forge libzlib 1.2.13 hd590300_5 conda-forge markupsafe 2.1.3 py310h2372a71_0 conda-forge miniwdl 1.10.0 pyhd8ed1ab_0 conda-forge ncurses 6.4 hcb278e6_0 conda-forge openjdk 8.0.332 h166bdaf_0 conda-forge openssl 3.1.2 hd590300_0 conda-forge packaging 23.1 pyhd8ed1ab_0 conda-forge paramiko 3.2.0 pyhd8ed1ab_0 conda-forge pip 23.2.1 pyhd8ed1ab_0 conda-forge pkgutil-resolve-name 1.3.10 pyhd8ed1ab_0 conda-forge pluggy 1.2.0 pyhd8ed1ab_0 conda-forge psutil 5.9.5 py310h1fa729e_0 conda-forge pycparser 2.21 pyhd8ed1ab_0 conda-forge pygtail 0.14.0 pyhd8ed1ab_0 conda-forge pyjsparser 2.7.1 pyh8c360ce_0 conda-forge pynacl 1.5.0 py310h5764c6d_2 conda-forge pysam 0.21.0 py310h41dec4a_1 bioconda pysocks 1.7.1 pyha2e5f31_6 conda-forge pytest 7.4.0 pyhd8ed1ab_0 conda-forge pytest-workflow 2.0.1 pyhd8ed1ab_0 conda-forge python 3.10.12 hd12c33a_0_cpython conda-forge python-json-logger 2.0.7 pyhd8ed1ab_0 conda-forge python_abi 3.10 3_cp310 conda-forge pywin32-on-windows 0.1.0 pyh1179c8e_3 conda-forge pyyaml 6.0 py310h5764c6d_5 conda-forge readline 8.2 h8228510_1 conda-forge referencing 0.30.0 pyhd8ed1ab_0 conda-forge regex 2023.6.3 py310h2372a71_0 conda-forge requests 2.31.0 pyhd8ed1ab_0 conda-forge rpds-py 0.9.2 py310hcb5633a_0 conda-forge rtg-tools 3.12.1 hdfd78af_0 bioconda setuptools 68.0.0 pyhd8ed1ab_0 conda-forge six 1.16.0 pyh6c4a22f_0 conda-forge tk 8.6.12 h27826a3_0 conda-forge tomli 2.0.1 pyhd8ed1ab_0 conda-forge tzdata 2023c h71feb2d_0 conda-forge tzlocal 5.0.1 py310hff52083_0 conda-forge urllib3 2.0.4 pyhd8ed1ab_0 conda-forge wdl-aid 1.0.0 pyhd8ed1ab_0 conda-forge websocket-client 1.6.1 pyhd8ed1ab_0 conda-forge wheel 0.41.0 pyhd8ed1ab_0 conda-forge womtool 61 hdfd78af_0 bioconda xdg 6.0.0 pyhd8ed1ab_0 conda-forge xz 5.2.6 h166bdaf_0 conda-forge yaml 0.2.5 h7f98852_2 conda-forge zipp 3.16.2 pyhd8ed1ab_0 conda-forge zlib 1.2.13 hd590300_5 conda-forge zstd 1.5.2 hfc55251_7 conda-forge
The text was updated successfully, but these errors were encountered:
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womtool graph germline.wdlI got an error:
wdl and version:
germline.wdl(https://github.com/biowdl/germline-DNA/releases/download/v5.0.0/germline_v5.0.0.wdl)
womtool:
# Name Version Build Channel _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_gnu conda-forge argcomplete 1.12.3 pyhd8ed1ab_0 conda-forge atomicwrites 1.4.1 pyhd8ed1ab_0 conda-forge attrs 23.1.0 pyh71513ae_1 conda-forge bcrypt 3.2.2 py310h5764c6d_1 conda-forge brotli-python 1.0.9 py310hd8f1fbe_9 conda-forge bullet-python 2.2.0 py310hff52083_6 conda-forge bzip2 1.0.8 h7f98852_4 conda-forge c-ares 1.19.1 hd590300_0 conda-forge ca-certificates 2023.7.22 hbcca054_0 conda-forge certifi 2023.7.22 pyhd8ed1ab_0 conda-forge cffi 1.15.1 py310h255011f_3 conda-forge charset-normalizer 3.2.0 pyhd8ed1ab_0 conda-forge colorama 0.4.6 pyhd8ed1ab_0 conda-forge coloredlogs 15.0.1 pyhd8ed1ab_3 conda-forge cromwell 0.40 1 bioconda cryptography 41.0.2 py310h75e40e8_0 conda-forge docker-py 6.1.3 pyhd8ed1ab_0 conda-forge exceptiongroup 1.1.2 pyhd8ed1ab_0 conda-forge expat 2.5.0 hcb278e6_1 conda-forge findutils 4.6.0 h166bdaf_1001 conda-forge font-ttf-dejavu-sans-mono 2.37 hab24e00_0 conda-forge fontconfig 2.14.2 h14ed4e7_0 conda-forge freetype 2.12.1 hca18f0e_1 conda-forge gettext 0.21.1 h27087fc_0 conda-forge humanfriendly 10.0 py310hff52083_4 conda-forge idna 3.4 pyhd8ed1ab_0 conda-forge importlib-metadata 6.8.0 pyha770c72_0 conda-forge importlib_metadata 6.8.0 hd8ed1ab_0 conda-forge importlib_resources 6.0.0 pyhd8ed1ab_1 conda-forge iniconfig 2.0.0 pyhd8ed1ab_0 conda-forge jinja2 3.1.2 pyhd8ed1ab_1 conda-forge js2py 0.74 pyhd8ed1ab_0 conda-forge jsonschema 4.18.4 pyhd8ed1ab_0 conda-forge jsonschema-specifications 2023.7.1 pyhd8ed1ab_0 conda-forge keyutils 1.6.1 h166bdaf_0 conda-forge krb5 1.21.1 h659d440_0 conda-forge lark 1.1.7 pyhd8ed1ab_0 conda-forge ld_impl_linux-64 2.40 h41732ed_0 conda-forge libcurl 8.2.1 hca28451_0 conda-forge libdeflate 1.18 h0b41bf4_0 conda-forge libedit 3.1.20191231 he28a2e2_2 conda-forge libev 4.33 h516909a_1 conda-forge libexpat 2.5.0 hcb278e6_1 conda-forge libffi 3.4.2 h7f98852_5 conda-forge libgcc-ng 13.1.0 he5830b7_0 conda-forge libgomp 13.1.0 he5830b7_0 conda-forge libnghttp2 1.52.0 h61bc06f_0 conda-forge libnsl 2.0.0 h7f98852_0 conda-forge libpng 1.6.39 h753d276_0 conda-forge libsodium 1.0.18 h36c2ea0_1 conda-forge libsqlite 3.42.0 h2797004_0 conda-forge libssh2 1.11.0 h0841786_0 conda-forge libstdcxx-ng 13.1.0 hfd8a6a1_0 conda-forge libuuid 2.38.1 h0b41bf4_0 conda-forge libzlib 1.2.13 hd590300_5 conda-forge markupsafe 2.1.3 py310h2372a71_0 conda-forge miniwdl 1.10.0 pyhd8ed1ab_0 conda-forge ncurses 6.4 hcb278e6_0 conda-forge openjdk 8.0.332 h166bdaf_0 conda-forge openssl 3.1.2 hd590300_0 conda-forge packaging 23.1 pyhd8ed1ab_0 conda-forge paramiko 3.2.0 pyhd8ed1ab_0 conda-forge pip 23.2.1 pyhd8ed1ab_0 conda-forge pkgutil-resolve-name 1.3.10 pyhd8ed1ab_0 conda-forge pluggy 1.2.0 pyhd8ed1ab_0 conda-forge psutil 5.9.5 py310h1fa729e_0 conda-forge pycparser 2.21 pyhd8ed1ab_0 conda-forge pygtail 0.14.0 pyhd8ed1ab_0 conda-forge pyjsparser 2.7.1 pyh8c360ce_0 conda-forge pynacl 1.5.0 py310h5764c6d_2 conda-forge pysam 0.21.0 py310h41dec4a_1 bioconda pysocks 1.7.1 pyha2e5f31_6 conda-forge pytest 7.4.0 pyhd8ed1ab_0 conda-forge pytest-workflow 2.0.1 pyhd8ed1ab_0 conda-forge python 3.10.12 hd12c33a_0_cpython conda-forge python-json-logger 2.0.7 pyhd8ed1ab_0 conda-forge python_abi 3.10 3_cp310 conda-forge pywin32-on-windows 0.1.0 pyh1179c8e_3 conda-forge pyyaml 6.0 py310h5764c6d_5 conda-forge readline 8.2 h8228510_1 conda-forge referencing 0.30.0 pyhd8ed1ab_0 conda-forge regex 2023.6.3 py310h2372a71_0 conda-forge requests 2.31.0 pyhd8ed1ab_0 conda-forge rpds-py 0.9.2 py310hcb5633a_0 conda-forge rtg-tools 3.12.1 hdfd78af_0 bioconda setuptools 68.0.0 pyhd8ed1ab_0 conda-forge six 1.16.0 pyh6c4a22f_0 conda-forge tk 8.6.12 h27826a3_0 conda-forge tomli 2.0.1 pyhd8ed1ab_0 conda-forge tzdata 2023c h71feb2d_0 conda-forge tzlocal 5.0.1 py310hff52083_0 conda-forge urllib3 2.0.4 pyhd8ed1ab_0 conda-forge wdl-aid 1.0.0 pyhd8ed1ab_0 conda-forge websocket-client 1.6.1 pyhd8ed1ab_0 conda-forge wheel 0.41.0 pyhd8ed1ab_0 conda-forge womtool 61 hdfd78af_0 bioconda xdg 6.0.0 pyhd8ed1ab_0 conda-forge xz 5.2.6 h166bdaf_0 conda-forge yaml 0.2.5 h7f98852_2 conda-forge zipp 3.16.2 pyhd8ed1ab_0 conda-forge zlib 1.2.13 hd590300_5 conda-forge zstd 1.5.2 hfc55251_7 conda-forgeThe text was updated successfully, but these errors were encountered: