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Note about MVR result vector nondeterminism
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jmthibault79 committed Aug 22, 2014
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5 changes: 5 additions & 0 deletions gamgee/multiple_variant_reader.h
Expand Up @@ -11,6 +11,11 @@ namespace gamgee {
/**
* @brief Utility class to read multiple VCF/BCF files with an appropriate iterator in a for-each loop.
*
* @note result vectors will be ordered arbitrarily per location. There is no guarantee or expectation that the vector
* will be in the same order (or have the same number) as the inputs. In the common case where all files have exactly
* the same sites, it is recommended to use a zip iterator over SingleVariantReaders. This will produce a deterministic
* ordering and will be faster than MultipleVariantReader.
*
* This class is designed to parse files in for-each loops with the following signature:
*
* ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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