Training data mode in Mutect2 to prepare for Mutect3 #7109
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takutosato
approved these changes
Mar 8, 2021
src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/DepthPerSampleHC.java
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src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/AssemblyComplexity.java
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src/test/java/org/broadinstitute/hellbender/tools/walkers/mutect/Mutect2IntegrationTest.java
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| } | ||
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| /** | ||
| * Annotates the given variant context - adds all annotations that satisfy the predicate. |
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Since we have the docs here, we should delete the (identical) docs above the other annotateContext() method.
src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/VariantAnnotation.java
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...in/java/org/broadinstitute/hellbender/tools/walkers/annotator/OrientationBiasReadCounts.java
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src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/FeaturizedReadSets.java
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@takutosato Could you look at this?