remove extra column and make comma separated cell count data

broadinstitute · May 15, 2020 · bee9e79 · bee9e79
1 parent 9ba43e0
commit bee9e79
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/profiles/profile.py b/profiles/profile.py
@@ -59,9 +59,9 @@
 )
 
 # Count cells
-count_file = pathlib.PurePath(cell_count_dir, f"{plate_name}_cell_count.tsv")
+count_file = pathlib.PurePath(cell_count_dir, f"{plate_name}_cell_count.csv")
 cell_count_df = ap.count_cells()
-cell_count_df.to_csv(count_file, sep="\t")
+cell_count_df.to_csv(count_file, sep=",", index=False)
 
 del ap