bug fix for bam2fastq #1127
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| name: validate-dockstore-yaml | |
| on: push | |
| jobs: | |
| publish-test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout branch | |
| uses: actions/checkout@v3 | |
| - name: Setup Java 17 | |
| uses: actions/setup-java@v2 | |
| with: | |
| distribution: 'temurin' | |
| java-version: '17' | |
| - name: Cache node_modules | |
| uses: actions/cache@v2 | |
| with: | |
| path: "**/node_modules" | |
| key: ${{ runner.os }}-modules-${{ env.cache-name }}-${{ hashFiles('**/yarn.lock') }} | |
| - name: Install dockstore cli | |
| run: | | |
| mkdir -p ~/bin | |
| curl -L -o ~/bin/dockstore https://github.com/dockstore/dockstore-cli/releases/download/1.14.0/dockstore | |
| chmod +x ~/bin/dockstore | |
| export PATH=~/bin:$PATH | |
| mkdir -p ~/.dockstore | |
| printf "token: 19dd4c1120940ea0f604cc856826d58eae108eeb72b8bb6186a8ce0e60b96637\nserver-url: https://dockstore.org/api\n" > ~/.dockstore/config | |
| dockstore --version | |
| - name: Validate dockstore.yml | |
| run: | | |
| export PATH=~/bin:$PATH | |
| validation_output=$(dockstore yaml validate --path .) | |
| echo "$validation_output" | |
| if [[ $validation_output == *"Your .dockstore.yml has the following errors"* || $validation_output == *"Your .dockstore.yml is invalid"* ]]; then | |
| echo "Dockstore validation failed." | |
| exit 1 | |
| fi |