Join GitHub today
GitHub is home to over 31 million developers working together to host and review code, manage projects, and build software together.Sign up
Feature request for LiftoverVcf to process special case of hg19<-->GRCh37 GVCFs #1002
Application to research is detailed by scientists below. This sounds rather useful to me. Original post is on GATK forum and link to it is at the end.
The usecase would be special in that no other reference combinations would be allowed. Liftover applies to the genomic coordinates AND the
Instead of relying on a CHAIN file, perhaps there could be a special parameter that allows conversion between +/-
Thanks and Regards,
This Issue was generated from your [forums]