Merge eed8959 into c34ff18

.github/workflows/build.yml

@@ -0,0 +1,96 @@
+name: Scala tests with coverage
+
+on:
+  pull_request:
+    paths-ignore: ['**.md']
+  push:
+    paths-ignore: ['**.md']
+
+jobs:
+  test:
+
+    runs-on: ubuntu-latest
+
+    env:
+      SBT_OPTS: >-
+        -Xmx3g
+        -Denv.type=test
+        -Ddirectory.url=ldap://localhost:3389 -Ddirectory.password=testtesttest
+        -Dpostgres.host=localhost -Dpostgres.port=5432
+
+    services:
+      postgres:
+        image: postgres:9.6
+        env:
+          POSTGRES_USER: sam-test
+          POSTGRES_PASSWORD: sam-test
+          POSTGRES_DB: testdb
+        options: >-
+          --health-cmd pg_isready
+          --health-interval 10s
+          --health-timeout 5s
+          --health-retries 5
+        ports:
+          - 5432:5432
+
+#      openDJ:
+#        image: broadinstitute/openam:opendj
+#        env:
+#          ROOTPASS: testtesttest
+#          BASE_DN: dc=dsde-dev,dc=broadinstitute,dc=org
+#        options: >-
+#          --health-cmd status
+#          --health-interval 10s
+#          --health-timeout 5s
+#          --health-retries 5
+##          -v ${{ github.workspace }}/docker/opendjsetup.sh:/opt/opendj/bootstrap/setup.sh
+##          -v ${{ github.workspace }}/docker/example-v1.json:/opt/example-v1.json
+#        ports:
+#          - 3389:389
+
+    steps:
+      - uses: actions/checkout@v2
+
+      # coursier cache action caches both coursier and sbt caches
+      - name: coursier-cache-action
+        uses: coursier/cache-action@v5
+
+      - name: Set up opendj
+        run: |
+          sh docker/run-opendj.sh start
+
+      - name: Set up JDK 11
+        uses: actions/setup-java@v1
+        with:
+          java-version: 11
+
+      - name: Git secrets setup
+        run: |
+          git clone https://github.com/awslabs/git-secrets.git ~/git-secrets
+          cd ~/git-secrets
+          git checkout ad82d68ee924906a0401dfd48de5057731a9bc84
+          sudo make install
+
+      - name: Secrets check
+        run: |
+          ./minnie-kenny.sh --force
+          git secrets --scan-history
+#
+#      - name: Integration tests
+#        id: tests
+#        run: sbt clean "testOnly -- -n org.broadinstitute.tags.SchemaInit"
+
+#      - name: Generate coverage report
+#        id: coverageReport
+#        run: sbt coverage "testOnly -- -l org.broadinstitute.tags.SchemaInit" coverageReport
+
+      - name: Generate java client
+        id: javaClient
+        run: |
+          bash scripts/gen_java_client.sh
+          export SBT_OPTS="-Xmx3g"
+          bash scripts/publish-client.sh
+
+      - name: Shut down opendj
+        run: |
+          sh docker/run-opendj.sh stop

scripts/gen_java_client.sh

@@ -1,7 +1,8 @@
 set -e
 
 docker run --rm -v ${PWD}:/local openapitools/openapi-generator-cli:v4.0.3 generate -i /local/src/main/resources/swagger/api-docs.yaml -g java -o /local/codegen_java --api-package org.broadinstitute.dsde.workbench.client.sam.api --model-package org.broadinstitute.dsde.workbench.client.sam.model
-
+echo ranDockerCommand
 cd codegen_java
-
-sbt test
+echo attemptingTesting
+sbt test
+echo finishedTesting