GitHub - broadinstitute/seqr-loading-pipelines: hail-based pipelines for annotating variant callsets and exporting them to elasticsearch

The hail scripts in this repo can be used to pre-process variant callsets and export them to elasticsearch.

Name		Name	Last commit message	Last commit date
Latest commit History 2,758 Commits
.github/workflows		.github/workflows
docker		docker
download_and_create_reference_datasets/v02		download_and_create_reference_datasets/v02
gcloud_dataproc		gcloud_dataproc
hail_builds/v02		hail_builds/v02
hail_scripts		hail_scripts
kubernetes		kubernetes
luigi_pipeline		luigi_pipeline
v03_pipeline		v03_pipeline
.gitignore		.gitignore
CHANGELOG.md		CHANGELOG.md
CODEOWNERS		CODEOWNERS
CONTRIBUTING.md		CONTRIBUTING.md
LICENSE		LICENSE
README.md		README.md
pyproject.toml		pyproject.toml
requirements-dev.in		requirements-dev.in
requirements-dev.txt		requirements-dev.txt
requirements.in		requirements.in
requirements.txt		requirements.txt

broadinstitute/seqr-loading-pipelines