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migration from Travis CI to GitHub Actions #31

Merged
merged 16 commits into from
Oct 17, 2023
Merged

migration from Travis CI to GitHub Actions #31

merged 16 commits into from
Oct 17, 2023

Commits on Feb 14, 2023

  1. commit changes beginning migration from Travis CI to GitHub Actions

    @tomkinsc
    tomkinsc committed Feb 14, 2023
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  2. update GitHub cache action 

    update GitHub cache action (v2 -> v3) https://github.com/marketplace/actions/cache
in connection with deprecation of the save-state command ( https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/ )
    @tomkinsc
    tomkinsc committed Feb 14, 2023
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  3. update docker login action v1 -> v2

    @tomkinsc
    tomkinsc committed Feb 14, 2023
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  4. bump docker/setup-buildx-action v1 -> v2

    @tomkinsc
    tomkinsc committed Feb 14, 2023
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  5. update GitHub checkout action v2 -> v3

    @tomkinsc
    tomkinsc committed Feb 14, 2023
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  6. update GitHub setup-python action v2 -> v4

    @tomkinsc
    tomkinsc committed Feb 14, 2023
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  7. update docker/setup-buildx-action@v1 -> v2 in docs build action

    @tomkinsc
    tomkinsc committed Feb 14, 2023
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Commits on Feb 16, 2023

  1. bump ReadTheDocs python version 3.6 -> 3.8

    @tomkinsc
    tomkinsc committed Feb 16, 2023
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Commits on Feb 22, 2023

  1. update viral-baseimage to 2.2.0 containing upgrade from Ubuntu 18.04 … 

    …LTS (bionic) to Ubuntu 22.04 LTS (jammy)
    @tomkinsc
    tomkinsc committed Feb 22, 2023
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  2. remove Travis CI-related files

    @tomkinsc
    tomkinsc committed Feb 22, 2023
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Commits on Feb 23, 2023

  1. s/viral-assembly/viral-classify/

    @tomkinsc
    tomkinsc committed Feb 23, 2023
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Commits on Mar 3, 2023

  1. bump viral-core to 2.2.1

    @tomkinsc
    tomkinsc committed Mar 3, 2023
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Commits on Oct 6, 2023

  1. Merge branch 'master' into ct-github-actions

    @tomkinsc
    tomkinsc committed Oct 6, 2023
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Commits on Oct 12, 2023

  1. debug dependency-related docker build failures 

    bump Actions container cache version;  add perl-libwww-perl to env2 deps;  comment out conda strict channel priority
    @tomkinsc
    tomkinsc committed Oct 12, 2023
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Commits on Oct 17, 2023

  1. Disable KrakenUniq (for now) 

    Disable KrakenUniq from future versions for now, pending conda rebuild of @yesimon's fork and its dependencies
    @tomkinsc
    tomkinsc committed Oct 17, 2023
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  2. restore strict channel priority for env2

    @tomkinsc
    tomkinsc committed Oct 17, 2023
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