add --expected_assigned_fraction=0 to guess_barcodes call in WDL

broadinstitute · Jan 24, 2019 · 0355f29 · 0355f29
1 parent b712a26
commit 0355f29
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/pipes/WDL/workflows/tasks/tasks_demux.wdl b/pipes/WDL/workflows/tasks/tasks_demux.wdl
@@ -160,7 +160,7 @@ task illumina_demux {
       --compression_level=5 \
       --loglevel=DEBUG
 
-    illumina.py guess_barcodes barcodes.txt metrics.txt barcodes_outliers.txt
+    illumina.py guess_barcodes --expected_assigned_fraction=0 barcodes.txt metrics.txt barcodes_outliers.txt
 
     mkdir -p unmatched
     mv Unmatched.bam unmatched/