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Merge 8fa2cb3 into fbf6003
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tomkinsc committed Oct 24, 2018
2 parents fbf6003 + 8fa2cb3 commit 2c36063
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions pipes/Broad_UGER/jobscript.sh
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source /broad/software/scripts/useuse
use UGER
use Python-3.4
use .anaconda3-5.0.1
CONDAENVDIR=`python -c 'import yaml; import os; f=open("config.yaml");print(os.path.realpath(yaml.safe_load(f)["conda_env_dir"]));f.close()'`
MINICONDADIR=`python -c 'import yaml; import os; f=open("config.yaml");print(os.path.realpath(yaml.safe_load(f)["miniconda_dir"]));f.close()'`
BINDIR=`python -c 'import yaml; import os; f=open("config.yaml");print(os.path.realpath(yaml.safe_load(f)["bin_dir"]));f.close()'`
DATADIR=`python -c 'import yaml; import os; f=open("config.yaml");print(os.path.realpath(yaml.safe_load(f)["data_dir"]));f.close()'`
unuse Python-3.4
unuse .anaconda3-5.0.1

export PATH="$MINICONDADIR/bin:$PATH"

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