Merge branch 'master' into ct-trimmomatic-cutoff-values

pipes/Broad_UGER/jobscript.sh

@@ -20,8 +20,15 @@ source "$VENVDIR/bin/activate"
 # For this to work, re-run must be set to y via "qsub -r y"
 ls "$DATADIR" || exit 99
 
+echo $JOB_ID
+echo "=============================="
+
 {exec_job}
 
+# Report resource consumption because it's not reported by default
+echo "------------------------------"
+qstat -j $JOB_ID | grep '^usage'
+
 # if the job succeeds, snakemake 
 # touches jobfinished, thus if it exists cat succeeds. if cat fails, the error code indicates job failure
 # an error code of 100 is needed since UGER only prevents execution of dependent jobs if the preceding