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comment out parameter_meta
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comment out parameter_meta in attempt to debug file transfer-related failures
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tomkinsc committed May 14, 2018
1 parent a3419fc commit 45d09ce
Showing 1 changed file with 5 additions and 5 deletions.
10 changes: 5 additions & 5 deletions pipes/WDL/workflows/tasks/metagenomics.wdl
Expand Up @@ -8,11 +8,11 @@ task kraken {
File kraken_db_tar_lz4
File krona_taxonomy_db_tgz

parameter_meta {
kraken_db_tar_lz4: "stream" # for DNAnexus, until WDL implements the File| type
krona_taxonomy_db_tgz : "stream" # for DNAnexus, until WDL implements the File| type
#reads_unmapped_bam: "stream" # for DNAnexus, until WDL implements the File| type
}
#parameter_meta {
# kraken_db_tar_lz4: "stream" # for DNAnexus, until WDL implements the File| type
# krona_taxonomy_db_tgz : "stream" # for DNAnexus, until WDL implements the File| type
# #reads_unmapped_bam: "stream" # for DNAnexus, until WDL implements the File| type
#}

command {
set -ex -o pipefail
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