change unit test expected.cp to expected.cpickle so that github doesn…

…t think we have component pascal code in our repo
broadinstitute · Mar 19, 2015 · 536b377 · 536b377
1 parent 8e0bba9
commit 536b377
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/test/input/TestVPhaser2/expected.cp → test/input/TestVPhaser2/expected.cpickle b/test/input/TestVPhaser2/expected.cp → test/input/TestVPhaser2/expected.cpickle
diff --git a/test/unit/test_tools_vphaser2.py b/test/unit/test_tools_vphaser2.py
@@ -15,7 +15,7 @@ def test_vphaser2(self) :
         vphaser_main(inBam, outTab, numThreads = 8)
         with open(outTab, 'rt') as outf :
             recs = map(lambda s : s.strip('\n').split('\t'), outf.readlines())
-        with open(os.path.join(myInputDir, 'expected.cp'), 'rb') as expf :
+        with open(os.path.join(myInputDir, 'expected.cpickle'), 'rb') as expf :
             expectedRecs = pickle.load(expf)
         # Vphaser2 p-val calculation is unstable and sometimes varies from
         # run to run, so exclude it from comparison.
@@ -34,7 +34,7 @@ def test_vphaser2(self) :
         cat c1.sam c2.sam >new.sam
         samtools view -bh new.sam >new.bam
         
-        Creation of expected.cp:
+        Creation of expected.cpickle:
         cPickle.dump(list(Vphaser2Tool().iterate(inBam, numThreads = 8)),
-                     open('expected.cp', 'w'))
+                     open('expected.cpickle', 'w'))
         """