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Merge 9bdc573 into 7587fab
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tomkinsc committed Jul 11, 2019
2 parents 7587fab + 9bdc573 commit 5a43b19
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion pipes/WDL/workflows/tasks/tasks_assembly.wdl
Expand Up @@ -101,7 +101,7 @@ task scaffold {
Int? nucmer_max_gap
Int? nucmer_min_match
Int? nucmer_min_cluster
Int? scaffold_min_pct_contig_aligned
Float? scaffold_min_pct_contig_aligned

# do this in multiple steps in case the input doesn't actually have "assembly1-x" in the name
String sample_name = basename(basename(basename(contigs_fasta, ".fasta"), ".assembly1-trinity"), ".assembly1-spades")
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