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option in depletion to revert tags in aligned files (#751)
* clear additional attributes when calling RevertSam as part of depletion The desire is to revert the bam to unaligned state. Tags from representative bams listed via: samtools view input.bam | cut -f 12- | tr '\t' '\n' | cut -d ':' -f 1 | awk '{ if(!x[$1]++) { print }}' * make tag clearing optional, add to deplete_taxa WDL task * change optional format the DX web interface does not seem to render a UI element for Array[String]? * allow default tags (only pass specified tags if non-zero length * fix help text for tag list argument * add default tag list of tags to clear from input bam in RevertBam * hopefully allow tags_to_clear_space_separated to be passed through * bugfix for multipart blast database prefix; parallelize mvicuna rmdup by library * add log statements * Remove debug line
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