correct denominator in logging

broadinstitute · Apr 13, 2016 · 6bf6467 · 6bf6467
1 parent 0b560d2
commit 6bf6467
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/assembly.py b/assembly.py
@@ -323,7 +323,7 @@ def impute_from_reference(inFasta, inReference, outFasta, minLengthFraction, min
                 log.info("Assembly Quality - segment {idx} - name {segname} - contig len {len_actual} / {len_desired} ({min_frac}) - unambiguous bases {unamb_actual} / {unamb_desired} ({min_unamb})".format(
                     idx=idx+1, segname=refSeqObj.id,
                     len_actual=seq_len, len_desired=len(refSeqObj), min_frac=minLengthFraction,
-                    unamb_actual=non_n_count, unamb_desired=seq_len*minUnambig, min_unamb=minUnambig
+                    unamb_actual=non_n_count, unamb_desired=seq_len, min_unamb=minUnambig
                 ))
                 if seq_len < minLength or non_n_count < seq_len * minUnambig:
                     raise PoorAssemblyError(idx + 1, seq_len, non_n_count)