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change num_threads=0 for IlluminaBasecallsConverter
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pass num_threads=0 to picard’s IlluminaBasecallsToSam so that
IlluminaBasecallsConverter uses all available cores rather than the 4
cores previously hard-coded
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tomkinsc committed Jun 23, 2016
1 parent b7aa1a5 commit 7d31ea7
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion tools/picard.py
Expand Up @@ -292,7 +292,7 @@ class IlluminaBasecallsToSamTool(PicardTools):
'adapters_to_check': ('PAIRED_END', 'NEXTERA_V1', 'NEXTERA_V2'),
'max_reads_in_ram_per_tile': 100000,
'max_records_in_ram': 100000,
'num_processors': 4,
'num_processors': 0, # 0 = all available
'force_gc': False,
'include_non_pf_reads': False,
}
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