Merge branch 'master' into ct-lastal-filter-qc-check

broadinstitute · Jun 7, 2019 · 9c5d75e · 9c5d75e
2 parents c2b50bf + 028a72d
commit 9c5d75e
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/pipes/WDL/workflows/tasks/tasks_demux.wdl b/pipes/WDL/workflows/tasks/tasks_demux.wdl
@@ -37,7 +37,7 @@ task illumina_demux {
 
   String? flowcell
   Int?    minimumBaseQuality = 10
-  Int?    maxMismatches = 1
+  Int?    maxMismatches = 0
   Int?    minMismatchDelta
   Int?    maxNoCalls
   String? readStructure

diff --git a/tools/picard.py b/tools/picard.py
@@ -458,7 +458,7 @@ def execute(
 class ExtractIlluminaBarcodesTool(PicardTools):
     subtoolName = 'ExtractIlluminaBarcodes'
     jvmMemDefault = '8g'
-    defaults = {'read_structure': '101T8B8B101T', 'max_mismatches': 1, 'minimum_base_quality': 10, 'num_processors': 0}
+    defaults = {'read_structure': '101T8B8B101T', 'max_mismatches': 0, 'minimum_base_quality': 10, 'num_processors': 0}
     option_list = (
         'read_structure', 'max_mismatches', 'minimum_base_quality', 'min_mismatch_delta', 'max_no_calls',
         'minimum_quality', 'compress_outputs', 'num_processors'