removed url prefix from text used for hosted DB links

broadinstitute · May 19, 2016 · e3c72d4 · e3c72d4
1 parent 699d856
commit e3c72d4
Showing 1 changed file with 7 additions and 7 deletions.
diff --git a/docs/pipeuse.rst b/docs/pipeuse.rst
@@ -165,9 +165,9 @@ docs <ftp://ftp.ncbi.nih.gov/pub/agarwala/bmtagger/README.bmtagger.txt>`__.
 Pre-built depletion databases are available in both *.tar.gz and *.lz4 
 format, for removing human reads and common metagenomic contaminants:
 
--  `https://storage.googleapis.com/sabeti-public/depletion_dbs/GRCh37.68_ncRNA-GRCh37.68_transcripts-HS_rRNA_mitRNA.tar.gz <https://storage.googleapis.com/sabeti-public/depletion_dbs/GRCh37.68_ncRNA-GRCh37.68_transcripts-HS_rRNA_mitRNA.tar.gz>`__ (`*.lz4 <https://storage.googleapis.com/sabeti-public/depletion_dbs/GRCh37.68_ncRNA-GRCh37.68_transcripts-HS_rRNA_mitRNA.lz4>`__)
--  `https://storage.googleapis.com/sabeti-public/depletion_dbs/hg19.tar.gz <https://storage.googleapis.com/sabeti-public/depletion_dbs/hg19.tar.gz>`__ (`*.lz4 <https://storage.googleapis.com/sabeti-public/depletion_dbs/hg19.lz4>`__)
--  `https://storage.googleapis.com/sabeti-public/depletion_dbs/metagenomics_contaminants_v3.tar.gz <https://storage.googleapis.com/sabeti-public/depletion_dbs/metagenomics_contaminants_v3.tar.gz>`__ (`*.lz4 <https://storage.googleapis.com/sabeti-public/depletion_dbs/metagenomics_contaminants_v3.lz4>`__)
+-  `GRCh37.68_ncRNA-GRCh37.68_transcripts-HS_rRNA_mitRNA.tar.gz <https://storage.googleapis.com/sabeti-public/depletion_dbs/GRCh37.68_ncRNA-GRCh37.68_transcripts-HS_rRNA_mitRNA.tar.gz>`__ (`*.lz4 <https://storage.googleapis.com/sabeti-public/depletion_dbs/GRCh37.68_ncRNA-GRCh37.68_transcripts-HS_rRNA_mitRNA.lz4>`__)
+-  `hg19.tar.gz <https://storage.googleapis.com/sabeti-public/depletion_dbs/hg19.tar.gz>`__ (`*.lz4 <https://storage.googleapis.com/sabeti-public/depletion_dbs/hg19.lz4>`__)
+-  `metagenomics_contaminants_v3.tar.gz <https://storage.googleapis.com/sabeti-public/depletion_dbs/metagenomics_contaminants_v3.tar.gz>`__ (`*.lz4 <https://storage.googleapis.com/sabeti-public/depletion_dbs/metagenomics_contaminants_v3.lz4>`__)
 
 Note that these databases must be extracted prior to use.
 
@@ -187,7 +187,7 @@ from the University of Oxford.
 
 A pre-built depletion database is also available for BLAST:
 
--  `https://storage.googleapis.com/sabeti-public/depletion_dbs/metag_v3.ncRNA.mRNA.mitRNA.consensus.tar.gz <https://storage.googleapis.com/sabeti-public/depletion_dbs/metag_v3.ncRNA.mRNA.mitRNA.consensus.tar.gz>`__ (`*.lz4 <https://storage.googleapis.com/sabeti-public/depletion_dbs/metag_v3.ncRNA.mRNA.mitRNA.consensus.lz4>`__)
+-  `metag_v3.ncRNA.mRNA.mitRNA.consensus.tar.gz <https://storage.googleapis.com/sabeti-public/depletion_dbs/metag_v3.ncRNA.mRNA.mitRNA.consensus.tar.gz>`__ (`*.lz4 <https://storage.googleapis.com/sabeti-public/depletion_dbs/metag_v3.ncRNA.mRNA.mitRNA.consensus.lz4>`__)
 
 Note that this database must be extracted prior to use.
 
@@ -206,9 +206,9 @@ using `Kraken <https://ccb.jhu.edu/software/kraken/>`__,
 
 Pre-build databases for Kraken, Diamond, and Krona are available:
 
--  `https://storage.googleapis.com/sabeti-public/meta_dbs/kraken_db.tar.gz <https://storage.googleapis.com/sabeti-public/meta_dbs/kraken_db.tar.gz>`__ (`*.lz4 <https://storage.googleapis.com/sabeti-public/meta_dbs/kraken_db.tar.lz4>`__)
--  `https://storage.googleapis.com/sabeti-public/meta_dbs/krona_taxonomy_20160502.tar.gz <https://storage.googleapis.com/sabeti-public/meta_dbs/krona_taxonomy_20160502.tar.gz>`__ (`*.lz4 <https://storage.googleapis.com/sabeti-public/meta_dbs/krona_taxonomy_20160502.tar.lz4>`__)
--  `https://storage.googleapis.com/sabeti-public/meta_dbs/nr.dmnd.gz <https://storage.googleapis.com/sabeti-public/meta_dbs/nr.dmnd.gz>`__ (`*.lz4 <https://storage.googleapis.com/sabeti-public/meta_dbs/nr.dmnd.lz4>`__)
+-  `kraken_db.tar.gz <https://storage.googleapis.com/sabeti-public/meta_dbs/kraken_db.tar.gz>`__ (`*.lz4 <https://storage.googleapis.com/sabeti-public/meta_dbs/kraken_db.tar.lz4>`__)
+-  `krona_taxonomy_20160502.tar.gz <https://storage.googleapis.com/sabeti-public/meta_dbs/krona_taxonomy_20160502.tar.gz>`__ (`*.lz4 <https://storage.googleapis.com/sabeti-public/meta_dbs/krona_taxonomy_20160502.tar.lz4>`__)
+-  `nr.dmnd.gz <https://storage.googleapis.com/sabeti-public/meta_dbs/nr.dmnd.gz>`__ (`*.lz4 <https://storage.googleapis.com/sabeti-public/meta_dbs/nr.dmnd.lz4>`__)
 
 Note that these databases must be extracted prior to use.