add --no-same-owner to tar -x in WDL tasks #880
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notestaff
reviewed
Aug 22, 2018
| @@ -184,7 +184,7 @@ task refine { | |||
| # prep GATK | |||
| mkdir gatk | |||
| if [[ ${gatk_jar} == *.tar.bz2 ]]; then | |||
| tar -xjvf ${gatk_jar} -C gatk | |||
| tar -xjvf ${gatk_jar} -C gatk --no-same-owner | |||
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@tomkinsc not sure matters, but 'tar -o' is more portable: npm/npm#1128
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Thanks! Thought I checked this but apparently I have GNU tar installed on my Mac...
-o is more portable
|
Good catch. Though technically this is the one place we don’t have to be portable (since we’re running in docker), it’s good practice anyway. |
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