log vphaser2 output dir before execution

broadinstitute · Mar 20, 2024 · e3c9f8b · e3c9f8b
1 parent 11931a0
commit e3c9f8b
Showing 1 changed file with 2 additions and 0 deletions.
diff --git a/phylo/vphaser2.py b/phylo/vphaser2.py
@@ -28,6 +28,8 @@ def execute(self, inBam, outDir, numThreads=None):    # pylint: disable=W0221
         samtoolsTool = tools.samtools.SamtoolsTool()
         samtoolsTool.index(inBam)
 
+        log.info("V-Phaser2 output directory: '%s'", outDir)
+
         cmd = [self.install_and_get_path(), '-i', inBam, '-o', outDir]
         cmd_str = ' '.join(cmd)
         envCopy = os.environ.copy()