log coverage paths as relative (since coverage is run within a docker…

… container)
broadinstitute · Mar 21, 2024 · f277561 · f277561
1 parent 2cf1f54
commit f277561
Showing 1 changed file with 9 additions and 1 deletion.
diff --git a/.coveragerc b/.coveragerc
@@ -5,9 +5,15 @@ branch = True
 omit = tools/conda-tools/*
 disable_warnings =
     module-not-imported
+relative_files = True
+#data_file = '.coverage'
 
-[report]
+[paths]
+source =
+    viral-phylo/
+    /opt/viral-ngs/viral-phylo
 
+[report]
 exclude_lines =
     pragma: no cover
 
@@ -19,3 +25,5 @@ exclude_lines =
 
     if 0:
     if __name__ == .__main__.:
+
+#include_namespace_packages = true # pytest >=7.0