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remove miniwdl from docs build reqs viral-pipelines CI #2463: Commit d36a599 pushed by tomkinsc
July 30, 2024 18:26 27m 14s ct-docs-fix
ct-docs-fix
July 30, 2024 18:26 27m 14s
documentation build fixes viral-pipelines CI #2462: Pull request #546 synchronize by tomkinsc
July 30, 2024 18:26 27m 35s ct-docs-fix
ct-docs-fix
July 30, 2024 18:26 27m 35s
adjust doc build requirements to pin to particular versions; specify … viral-pipelines CI #2461: Commit acac234 pushed by tomkinsc
July 30, 2024 18:26 26m 41s ct-docs-fix
ct-docs-fix
July 30, 2024 18:26 26m 41s
documentation build fixes viral-pipelines CI #2460: Pull request #546 synchronize by tomkinsc
July 30, 2024 17:57 27m 44s ct-docs-fix
ct-docs-fix
July 30, 2024 17:57 27m 44s
Merge branch 'ct-docs-fix' of ssh://github.com/broadinstitute/viral-p… viral-pipelines CI #2459: Commit eb33082 pushed by tomkinsc
July 30, 2024 17:57 26m 37s ct-docs-fix
ct-docs-fix
July 30, 2024 17:57 26m 37s
documentation build fixes viral-pipelines CI #2458: Pull request #546 synchronize by tomkinsc
July 30, 2024 17:47 27m 3s ct-docs-fix
ct-docs-fix
July 30, 2024 17:47 27m 3s
allow newer sphinx versions <v8 viral-pipelines CI #2457: Commit f77ef56 pushed by tomkinsc
July 30, 2024 17:47 26m 55s ct-docs-fix
ct-docs-fix
July 30, 2024 17:47 26m 55s
documentation build fixes viral-pipelines CI #2456: Pull request #546 opened by tomkinsc
July 30, 2024 17:45 27m 54s ct-docs-fix
ct-docs-fix
July 30, 2024 17:45 27m 54s
Update requirements.txt viral-pipelines CI #2455: Commit e070fac pushed by tomkinsc
July 30, 2024 17:45 27m 20s ct-docs-fix
ct-docs-fix
July 30, 2024 17:45 27m 20s
Merge branch 'master' into lk-polyphonia-genome-defining-positions viral-pipelines CI #2454: Commit 44a18c2 pushed by tomkinsc
July 30, 2024 17:24 26m 27s lk-polyphonia-genome-defining-positions
lk-polyphonia-genome-defining-positions
July 30, 2024 17:24 26m 27s
Update polyphonia input parameters and defaults viral-pipelines CI #2453: Pull request #545 synchronize by tomkinsc
July 30, 2024 17:24 27m 5s lk-polyphonia-genome-defining-positions
lk-polyphonia-genome-defining-positions
July 30, 2024 17:24 27m 5s
restore code path skipped during prior dev viral-pipelines CI #2452: Commit 63acf56 pushed by tomkinsc
July 26, 2024 15:13 26m 56s ct-debug-table-insert
ct-debug-table-insert
July 26, 2024 15:13 26m 56s
try argparse again; unquiet the install for now viral-pipelines CI #2451: Commit 4722c68 pushed by dpark01
July 25, 2024 14:15 27m 38s dp-scaffold
dp-scaffold
July 25, 2024 14:15 27m 38s
update execution engine versions viral-pipelines CI #2450: Commit ef1ec2b pushed by dpark01
July 25, 2024 14:08 28m 9s dp-scaffold
dp-scaffold
July 25, 2024 14:08 28m 9s
added root-sequence parameter to ancestral_tree viral-pipelines CI #2449: Commit 9aa5bed pushed by lakras
July 23, 2024 20:20 27m 55s lk-nextstrain-clades
lk-nextstrain-clades
July 23, 2024 20:20 27m 55s
make bed sorting multisegment friendly viral-pipelines CI #2448: Commit b68fb5e pushed by dpark01
July 23, 2024 17:20 1m 30s dp-scaffold
dp-scaffold
July 23, 2024 17:20 1m 30s
removed reference in command in task assign_clades_to_nodes viral-pipelines CI #2447: Commit 05e57df pushed by lakras
July 23, 2024 02:09 27m 43s lk-nextstrain-clades
lk-nextstrain-clades
July 23, 2024 02:09 27m 43s
bugfix fetch_sra_to_bam (#542) viral-pipelines CI #2446: Commit 9f43dde pushed by lakras
July 23, 2024 02:06 27m 26s lk-nextstrain-clades
lk-nextstrain-clades
July 23, 2024 02:06 27m 26s
removed workflow outputs not output by task viral-pipelines CI #2445: Commit c0e2aab pushed by lakras
July 17, 2024 18:53 2m 47s lk-fetch-sra-to-bam-redo
lk-fetch-sra-to-bam-redo
July 17, 2024 18:53 2m 47s
deleted everything but the creation of the actual bam file viral-pipelines CI #2444: Commit b6e84bc pushed by lakras
July 16, 2024 22:05 1m 52s lk-fetch-sra-to-bam-redo-2
lk-fetch-sra-to-bam-redo-2
July 16, 2024 22:05 1m 52s
deleted everything but the creation of the actual bam file viral-pipelines CI #2443: Commit b6e84bc pushed by lakras
July 16, 2024 22:02 1m 38s lk-fetch-sra-to-bam-redo
lk-fetch-sra-to-bam-redo
July 16, 2024 22:02 1m 38s
deleted commented-out initial SAMPLE definition line viral-pipelines CI #2442: Commit 3747409 pushed by lakras
July 16, 2024 18:03 26m 52s lk-fetch-sra-to-bam-redo
lk-fetch-sra-to-bam-redo
July 16, 2024 18:03 26m 52s
gave SAMPLE default value of SAMPLE viral-pipelines CI #2441: Commit ab86577 pushed by lakras
July 16, 2024 17:55 27m 10s lk-fetch-sra-to-bam-redo
lk-fetch-sra-to-bam-redo
July 16, 2024 17:55 27m 10s
moved SAMPLE assignment to if statement viral-pipelines CI #2440: Commit 9f5a933 pushed by lakras
July 16, 2024 17:53 27m 7s lk-fetch-sra-to-bam-redo
lk-fetch-sra-to-bam-redo
July 16, 2024 17:53 27m 7s
modified whitespace in case it matters viral-pipelines CI #2439: Commit 45cbb6e pushed by lakras
July 16, 2024 17:48 26m 42s lk-fetch-sra-to-bam-redo
lk-fetch-sra-to-bam-redo
July 16, 2024 17:48 26m 42s