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updating docker string to new image viral-pipelines CI #2385: Commit 5c41876 pushed by golu099
June 8, 2024 21:40 1m 20s fn_chunking_blast
fn_chunking_blast
June 8, 2024 21:40 1m 20s
updating with relevant Blastoff scripts to new branch for PR request viral-pipelines CI #2384: Commit 2d54ef0 pushed by golu099
June 5, 2024 19:31 1m 29s fn_chunking_blast
fn_chunking_blast
June 5, 2024 19:31 1m 29s
updating this branch with task_megablast.wdl and blatoff.wdl viral-pipelines CI #2383: Commit 19ddae7 pushed by golu099
June 5, 2024 18:29 1m 22s master
master
June 5, 2024 18:29 1m 22s
Merge pull request #540 from broadinstitute/ct-bump-kraken2-mem viral-pipelines CI #2382: Commit 1b65621 pushed by golu099
June 5, 2024 18:03 31m 39s fn_chunking_blast
fn_chunking_blast
June 5, 2024 18:03 31m 39s
Merge pull request #540 from broadinstitute/ct-bump-kraken2-mem viral-pipelines CI #2381: Commit 1b65621 pushed by github-merge-queue bot
June 4, 2024 14:15 24m 54s master
master
June 4, 2024 14:15 24m 54s
In align_and_count, change default to count only properly-paired reads viral-pipelines CI #2380: Pull request #534 synchronize by tomkinsc
June 4, 2024 13:48 25m 53s ct-align_and_count-filter-to-proper-by-default
ct-align_and_count-filter-to-proper-by-default
June 4, 2024 13:48 25m 53s
Merge branch 'master' into ct-align_and_count-filter-to-proper-by-def… viral-pipelines CI #2379: Commit 4f074b4 pushed by tomkinsc
June 4, 2024 13:48 24m 36s ct-align_and_count-filter-to-proper-by-default
ct-align_and_count-filter-to-proper-by-default
June 4, 2024 13:48 24m 36s
Merge pull request #540 from broadinstitute/ct-bump-kraken2-mem viral-pipelines CI #2378: Commit 1b65621 pushed by github-merge-queue bot
June 4, 2024 13:47 25m 45s gh-readonly-queue/master/pr-540-efa9c76d161dabb56c41f6f8e093dceaccdff423
gh-readonly-queue/master/pr-540-efa9c76d161dabb56c41f6f8e093dceaccdff423
June 4, 2024 13:47 25m 45s
viral-pipelines CI viral-pipelines CI #2377: Merge group checks requested
June 4, 2024 13:47 26m 50s
June 4, 2024 13:47 26m 50s
Merge pull request #538 from broadinstitute/ct-assemble_refbased_refl… viral-pipelines CI #2376: Commit efa9c76 pushed by github-merge-queue bot
June 4, 2024 13:46 28m 5s gh-readonly-queue/master/pr-538-4362b070ca15703849a8bd6d7eb6ec9fe91b6a41
gh-readonly-queue/master/pr-538-4362b070ca15703849a8bd6d7eb6ec9fe91b6a41
June 4, 2024 13:46 28m 5s
viral-pipelines CI viral-pipelines CI #2375: Merge group checks requested
June 4, 2024 13:46 28m 10s
June 4, 2024 13:46 28m 10s
changing chunksize viral-pipelines CI #2374: Commit 806231e pushed by golu099
May 28, 2024 18:32 1m 26s fn_chunk_blastoff
fn_chunk_blastoff
May 28, 2024 18:32 1m 26s
input change to stage 2 viral-pipelines CI #2373: Commit fdeb4a9 pushed by golu099
May 28, 2024 18:30 1m 24s fn_chunk_blastoff
fn_chunk_blastoff
May 28, 2024 18:30 1m 24s
increase default instance memory for kraken2 task 72 -> 90GB viral-pipelines CI #2372: Pull request #540 synchronize by tomkinsc
May 24, 2024 14:15 27m 7s ct-bump-kraken2-mem
ct-bump-kraken2-mem
May 24, 2024 14:15 27m 7s
kraken2 task: specify runtime CPU hint; cpuPlatform: "Intel Ice Lake" viral-pipelines CI #2371: Commit 08bca88 pushed by tomkinsc
May 24, 2024 14:15 31m 33s ct-bump-kraken2-mem
ct-bump-kraken2-mem
May 24, 2024 14:15 31m 33s
increase default instance memory for kraken2 task 72 -> 90GB viral-pipelines CI #2370: Pull request #540 opened by tomkinsc
May 17, 2024 21:39 28m 3s ct-bump-kraken2-mem
ct-bump-kraken2-mem
May 17, 2024 21:39 28m 3s
increase instance memory for kraken2 task 72 -> 90GB viral-pipelines CI #2369: Commit 990546b pushed by tomkinsc
May 17, 2024 21:37 29m 53s ct-bump-kraken2-mem
ct-bump-kraken2-mem
May 17, 2024 21:37 29m 53s
in create_or_update_sample_tables, use the sample_original from demux as the key value for rows rather than sample (i.e. use IDs with forward slashes not dashes) viral-pipelines CI #2368: Pull request #539 opened by tomkinsc
May 15, 2024 14:56 28m 20s ct-use-sample_original_value_for_sample_table
ct-use-sample_original_value_for_sample_table
May 15, 2024 14:56 28m 20s
Update tasks_terra.wdl viral-pipelines CI #2367: Commit 7323f6b pushed by tomkinsc
May 15, 2024 14:55 28m 21s ct-use-sample_original_value_for_sample_table
ct-use-sample_original_value_for_sample_table
May 15, 2024 14:55 28m 21s
add workflow to download multiple SRA accessions to multiple bams: fetch_multiple_sra_to_bams viral-pipelines CI #2366: Pull request #537 synchronize by tomkinsc
May 15, 2024 14:46 29m 33s ct-pluralize-fetch-sra-to-bam
ct-pluralize-fetch-sra-to-bam
May 15, 2024 14:46 29m 33s
restore original runtime params viral-pipelines CI #2365: Commit 65346ca pushed by tomkinsc
May 15, 2024 14:46 27m 19s ct-pluralize-fetch-sra-to-bam
ct-pluralize-fetch-sra-to-bam
May 15, 2024 14:46 27m 19s
chanigng docker image viral-pipelines CI #2364: Commit 79bbb3e pushed by golu099
May 15, 2024 14:26 1m 35s fn_chunk_blastoff
fn_chunk_blastoff
May 15, 2024 14:26 1m 35s
fixed name output for blastoff viral-pipelines CI #2363: Commit 59ffeb5 pushed by golu099
May 15, 2024 14:16 1m 23s fn_chunk_blastoff
fn_chunk_blastoff
May 15, 2024 14:16 1m 23s
updating chunkblasthits viral-pipelines CI #2362: Commit c0f7d1d pushed by golu099
May 15, 2024 14:09 1m 33s fn_chunk_blastoff
fn_chunk_blastoff
May 15, 2024 14:09 1m 33s
parsing taxidlist in a different way viral-pipelines CI #2361: Commit d8903d2 pushed by golu099
May 15, 2024 13:47 1m 22s fn_chunk_blast_hits
fn_chunk_blast_hits
May 15, 2024 13:47 1m 22s