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removed everything but sample from Fetch_SRA_to_BAM_BAM_only viral-pipelines CI #2426: Commit c60daa7 pushed by lakras
July 14, 2024 19:58 26m 44s lk-fetch-sra-to-bam-with-missing-metadata
lk-fetch-sra-to-bam-with-missing-metadata
July 14, 2024 19:58 26m 44s
moved fetch_sra_to_bam_bam_only to fetch_sra_to_bam to find it in doc… viral-pipelines CI #2425: Commit deb4065 pushed by lakras
July 14, 2024 19:56 27m 5s lk-fetch-sra-to-bam-with-missing-metadata
lk-fetch-sra-to-bam-with-missing-metadata
July 14, 2024 19:56 27m 5s
added imports viral-pipelines CI #2424: Commit 4503cfc pushed by lakras
July 14, 2024 13:14 27m 8s lk-fetch-sra-to-bam-with-missing-metadata
lk-fetch-sra-to-bam-with-missing-metadata
July 14, 2024 13:14 27m 8s
added workflow viral-pipelines CI #2423: Commit 99487d1 pushed by lakras
July 14, 2024 13:14 1m 36s lk-fetch-sra-to-bam-with-missing-metadata
lk-fetch-sra-to-bam-with-missing-metadata
July 14, 2024 13:14 1m 36s
removed fetch_sra_to_bam_bam_only viral-pipelines CI #2422: Commit 9b36543 pushed by lakras
July 14, 2024 13:13 27m 3s lk-fetch-sra-to-bam-with-missing-metadata
lk-fetch-sra-to-bam-with-missing-metadata
July 14, 2024 13:13 27m 3s
created fetch_sra_to_bam_bam_only.wdl viral-pipelines CI #2421: Commit 54d4d14 pushed by lakras
July 14, 2024 13:12 1m 40s lk-fetch-sra-to-bam-with-missing-metadata
lk-fetch-sra-to-bam-with-missing-metadata
July 14, 2024 13:12 1m 40s
added Fetch_SRA_to_BAM_BAM_only viral-pipelines CI #2420: Commit 2c17fe2 pushed by lakras
July 14, 2024 13:07 22m 54s lk-fetch-sra-to-bam-with-missing-metadata
lk-fetch-sra-to-bam-with-missing-metadata
July 14, 2024 13:07 22m 54s
added workflow fetch_sra_to_bam_bam_only viral-pipelines CI #2419: Commit 4407ba1 pushed by lakras
July 14, 2024 13:01 1m 52s lk-fetch-sra-to-bam-with-missing-metadata
lk-fetch-sra-to-bam-with-missing-metadata
July 14, 2024 13:01 1m 52s
put back non-bam file parts viral-pipelines CI #2418: Commit 5f409b4 pushed by lakras
July 13, 2024 22:46 26m 12s lk-fetch-sra-to-bam-with-missing-metadata
lk-fetch-sra-to-bam-with-missing-metadata
July 13, 2024 22:46 26m 12s
put back the non-bam file parts viral-pipelines CI #2417: Commit 7e48397 pushed by lakras
July 13, 2024 22:44 1m 41s lk-fetch-sra-to-bam-with-missing-metadata
lk-fetch-sra-to-bam-with-missing-metadata
July 13, 2024 22:44 1m 41s
remove everything but the bam file viral-pipelines CI #2416: Commit 44851d8 pushed by lakras
July 13, 2024 20:19 2m 44s lk-fetch-sra-to-bam-with-missing-metadata
lk-fetch-sra-to-bam-with-missing-metadata
July 13, 2024 20:19 2m 44s
remove everything but the bam file in Fetch_SRA_to_BAM viral-pipelines CI #2415: Commit 255271a pushed by lakras
July 13, 2024 20:18 1m 36s lk-fetch-sra-to-bam-with-missing-metadata
lk-fetch-sra-to-bam-with-missing-metadata
July 13, 2024 20:18 1m 36s
following chatgpt's feedback to treat .IDENTIFIERS.EXTERNAL_ID as an … viral-pipelines CI #2414: Commit b2fda7f pushed by lakras
July 13, 2024 19:37 26m 51s lk-fetch-sra-to-bam-with-missing-metadata
lk-fetch-sra-to-bam-with-missing-metadata
July 13, 2024 19:37 26m 51s
set file contents to NA if they don't exist or are empty viral-pipelines CI #2413: Commit 07b6079 pushed by lakras
July 13, 2024 16:45 26m 49s lk-fetch-sra-to-bam-with-missing-metadata
lk-fetch-sra-to-bam-with-missing-metadata
July 13, 2024 16:45 26m 49s
touch numeric WDL outputs viral-pipelines CI #2412: Commit e0437b2 pushed by lakras
July 13, 2024 16:02 28m 25s lk-fetch-sra-to-bam-with-missing-metadata
lk-fetch-sra-to-bam-with-missing-metadata
July 13, 2024 16:02 28m 25s
added OUT_LIBRARY_STRATEGY to touch commands viral-pipelines CI #2411: Commit 6eee992 pushed by lakras
July 13, 2024 15:34 27m 0s lk-fetch-sra-to-bam-with-missing-metadata
lk-fetch-sra-to-bam-with-missing-metadata
July 13, 2024 15:34 27m 0s
attempt touch after tee viral-pipelines CI #2410: Commit a664716 pushed by lakras
July 13, 2024 14:58 27m 37s lk-fetch-sra-to-bam-with-missing-metadata
lk-fetch-sra-to-bam-with-missing-metadata
July 13, 2024 14:58 27m 37s
bugfix fetch_sra_to_bam (#542) viral-pipelines CI #2409: Commit 9f43dde pushed by lakras
July 13, 2024 14:55 27m 34s lk-fetch-sra-to-bam-with-missing-metadata
lk-fetch-sra-to-bam-with-missing-metadata
July 13, 2024 14:55 27m 34s
emit additional info, including table update tsvs viral-pipelines CI #2408: Commit 9cc26ad pushed by tomkinsc
July 12, 2024 22:40 27m 55s ct-debug-table-insert
ct-debug-table-insert
July 12, 2024 22:40 27m 55s
Update polyphonia input parameters and defaults viral-pipelines CI #2407: Pull request #545 opened by lakras
July 5, 2024 16:57 32m 37s lk-polyphonia-genome-defining-positions
lk-polyphonia-genome-defining-positions
July 5, 2024 16:57 32m 37s
updated default values of min_matches and min_matches_proportion viral-pipelines CI #2406: Commit 3ce9677 pushed by lakras
July 2, 2024 02:39 13m 51s lk-polyphonia-genome-defining-positions
lk-polyphonia-genome-defining-positions
July 2, 2024 02:39 13m 51s
skip older docker tags viral-pipelines CI #2405: Commit 9e62a6d pushed by golu099
June 25, 2024 16:06 26m 46s fn_chunking_blast
fn_chunking_blast
June 25, 2024 16:06 26m 46s
bugfix fetch_sra_to_bam (#542) viral-pipelines CI #2404: Commit 9f43dde pushed by tomkinsc
June 19, 2024 22:39 24m 9s master
master
June 19, 2024 22:39 24m 9s
bugfix fetch_sra_to_bam viral-pipelines CI #2403: Pull request #542 opened by tomkinsc
June 19, 2024 22:09 25m 25s ct-bugifx-sra-fetch
ct-bugifx-sra-fetch
June 19, 2024 22:09 25m 25s
temporarily skip version pinning of viral-classify in tasks_megablast… viral-pipelines CI #2402: Commit daa70c5 pushed by tomkinsc
June 19, 2024 21:56 28m 47s ct-bugifx-sra-fetch
ct-bugifx-sra-fetch
June 19, 2024 21:56 28m 47s