put back the non-bam file parts

broadinstitute · Jul 13, 2024 · 7e48397 · 7e48397
1 parent 44851d8
commit 7e48397
Showing 1 changed file with 11 additions and 0 deletions.
diff --git a/pipes/WDL/workflows/fetch_sra_to_bam.wdl b/pipes/WDL/workflows/fetch_sra_to_bam.wdl
@@ -25,5 +25,16 @@ workflow fetch_sra_to_bam {
 
     output {
         File   reads_ubam                = Fetch_SRA_to_BAM.reads_ubam
+        String sequencing_center         = Fetch_SRA_to_BAM.sequencing_center
+        String sequencing_platform       = Fetch_SRA_to_BAM.sequencing_platform
+        String sequencing_platform_model = Fetch_SRA_to_BAM.sequencing_platform_model
+        String biosample_accession       = Fetch_SRA_to_BAM.biosample_accession
+        String library_id                = Fetch_SRA_to_BAM.library_id
+        String run_date                  = Fetch_SRA_to_BAM.run_date
+        String sample_collection_date    = Fetch_SRA_to_BAM.sample_collection_date
+        String sample_collected_by       = Fetch_SRA_to_BAM.sample_collected_by
+        String sample_strain             = Fetch_SRA_to_BAM.sample_strain
+        String sample_geo_loc            = Fetch_SRA_to_BAM.sample_geo_loc
+        File   sra_metadata              = Fetch_SRA_to_BAM.sra_metadata
     }
 }