Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

parameterize table names in create_or_update_sample_tables task #533

Open
wants to merge 2 commits into
base: master
Choose a base branch
from

Conversation

tomkinsc
Copy link
Member

This PR parameterizes table names used in the create_or_update_sample_tables task so the user can override "flowcell", "library", and "sample" with values of their choice. Since create_or_update_sample_tables reads from either a live table or json files provided as input (from demux), this should fall back gracefully to the default names if overridden but the json files have the old variable names

It also emits tsvs with the table data, for debugging and/or so in the future the table data gathered by the create_or_update_sample_tables task can be uploaded using theupload_entities_tsv task.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

1 participant