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add workflow to download multiple SRA accessions to multiple bams: fetch_multiple_sra_to_bams #537
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Commits on May 3, 2024
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add workflow to download multiple SRA accessions to multiple bams: fe…
…tch_multiple_sra_to_bams add workflow to download multiple SRA accessions to multiple bams: fetch_multiple_sra_to_bams; this is useful in the event a sample is associated with multiple sequencing runs (i.e. more than one SRR###). It also adjusts the Fetch_SRA_to_BAM task to find metadata for the requested run, in the event multi-run metadata is returned for a given accession
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name the output file using the first specified ID under WDL 1.0 (sep(…
…) function not available until WDL >= 1.1) name the output tsv file using the first specified ID since we are operating under WDL 1.0 (the `sep()` function is not available to join arrays of strings until WDL >= 1.1, and `~{sep="_" variable}` seemingly does not work outside a command block)
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Merge branch 'ct-pluralize-fetch-sra-to-bam' of ssh://github.com/broa…
…dinstitute/viral-pipelines into ct-pluralize-fetch-sra-to-bam
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Commits on May 14, 2024
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try googleLegacyMachineSelection to set GCP machineType
try googleLegacyMachineSelection to set GCP machineType, per broadinstitute/cromwell@7fa57a0
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ask for valid storage for N2 https://cloud.google.com/compute/docs/disks/local-ssd#choose_number_local_ssds
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Commits on May 15, 2024
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Commits on Jun 19, 2024
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