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Support for pandas version 2.*.* #1

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mbuttner opened this issue May 20, 2024 · 3 comments
Open

Support for pandas version 2.*.* #1

mbuttner opened this issue May 20, 2024 · 3 comments

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@mbuttner
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Hi @burtonrj

I wanted to link the pytometry issue #71 for the support of pandas version 2.*.* here.
Please let me know what you think.

@berombau
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berombau commented Aug 8, 2024

@burtonrj Do you still need to update the seaborn and pandas versions as mentioned in #71? I still get the installation issue.

burtonrj added a commit that referenced this issue Aug 8, 2024
Bumped pandas version - tests passing
burtonrj added a commit that referenced this issue Aug 8, 2024
burtonrj added a commit that referenced this issue Aug 8, 2024
@burtonrj
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burtonrj commented Aug 8, 2024

Sorry guys, completely dropped the ball on this on!

Bumped the version, dependencies are now as follows:

python = ">=3.9,<3.13"
numpy = "^1.20.0"
pandas = ">=2.0.0"
matplotlib = "^3.8.0"
seaborn = ">=0.13.0"
tqdm = "^4.66.1"
kneed = "^0.8.5"

Workflows are failing but tests run fine locally, I will look into this, but for now v0.2.3 in pypi with updated dependencies

@berombau
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Thanks! Looks good to me with the version pytometry-0.1.6.dev5+gccab5c0 via pip install git+https://github.com/scverse/pytometry.git@main consensusclustering==0.2.3.

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3 participants