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Code associated with our EMNLP paper "A Generative Joint, Additive, Sequential Model of Topics and Speech Acts in Patient-Doctor Communication". Unfortunately, we have not yet been able to secure IRB approval to release the actual data :(. But we give the expected data format and sample usage below, anyway. -Byron Wallace byron_wallace@brown.edu http://www.cebm.brown.edu/byron Data format -- The basic data format is as follows: boundary boundary:case_id=BMC3013_1 19 32 42 56 226 309 558 1889 1,2 558 19 58 145 168 216 1,2 56 35 16 20 3,2 … boundary boundary:case_id=XXX Where the "boundary" strings demarcate a new session. The last two (comma-separated) entries are the topic and speech act, respectively. The numbers are assumed to map to tokens (features). Sample usage -- import transcripts import joint_sequential_SATs tnb = transcripts.tnb_from_file("data/unigram-cases-joint/train.CRF.speakers.pronoun.question.unigram.joint.0.dat", hold_out_a_set=True) # train model and make predictions m = joint_sequential_SATs.JointSequential(tnb) m.estimate_parameters() # may take a while... test_cases = transcripts.load_test_cases("data/unigram-cases-joint/test.CRF.speakers.pronoun.question.unigram.joint.0.dat", tnb) preds_Y, preds_S = m.predict_set_sequential_joint(test_cases) # now assess performance import process_results test_Y, test_S = transcripts.parse_labels_file("data/unigram-cases-joint/test.CRF.speakers.pronoun.question.unigram.joint.0_labels.dat") print process_results.calc_metrics(test_Y, test_S, preds_Y, preds_S)
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Code associated with our EMNLP 2013 paper, "A Generative Joint, Additive, Sequential Model of Topics and Speech Acts in Patient-Doctor Communication"
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