Skip to content
@c-BIG

c-BIG

Centre for Big Data and Integrative Genomics (c-BIG) is an A*STAR multi-institutional effort to enable big data analytics and integrative genomics in Singapore

Popular repositories

  1. NPM-sample-qc NPM-sample-qc Public

    reference implementation of GA4GH WGS Quality Control Standards

    mupad 8 1

  2. SG10K-CYP2D6 SG10K-CYP2D6 Public

    Scripts and lab notebooks for characterising the variant landscape of CYP2D6 in the SG10K_Health cohort

    Jupyter Notebook 3

  3. wgs-sample-qc wgs-sample-qc Public

    visit https://github.com/ga4gh/quality-control-wgs instead. Repository to host ongoing discussions by GHIF members on developing a reference implementation for QC of WGS results

    Python 2 4

  4. Hail-on-AWS Hail-on-AWS Public

    Deploy an EMR cluster on AWS, with Spark, Hail, Zeppelin and Ensembl VEP using CloudFormation service.

    Shell 1

  5. sg10k-health sg10k-health Public

    the National Precision Medicine (NPM) program represents a whole-of-government ten-year strategy to establish precision medicine as a peak of research excellence for Singapore. Phase I (2017-2021) …

    Jupyter Notebook 1 1

  6. MultiQC_NPM MultiQC_NPM Public

    A MultiQC plugin for downstream analysis of NPM data

    Python

Repositories

Showing 10 of 13 repositories
  • SG10K-lcWGS Public

    lcWGS PRS imputation joint GRIDS-NPM x Nalagenetics project

    Nextflow 0 0 0 1 Updated Apr 10, 2024
  • NPM-sample-qc Public

    reference implementation of GA4GH WGS Quality Control Standards

    mupad 8 MIT 1 0 1 Updated Apr 8, 2024
  • SG10K-CYP2D6 Public

    Scripts and lab notebooks for characterising the variant landscape of CYP2D6 in the SG10K_Health cohort

    Jupyter Notebook 3 0 0 1 Updated Mar 26, 2024
  • Hail-on-AWS Public

    Deploy an EMR cluster on AWS, with Spark, Hail, Zeppelin and Ensembl VEP using CloudFormation service.

    Shell 1 Apache-2.0 0 0 2 Updated Oct 25, 2023
  • lambda-chorus-vcf Public
    JavaScript 0 MIT 0 0 0 Updated May 12, 2023
  • wgs-sample-qc Public

    visit https://github.com/ga4gh/quality-control-wgs instead. Repository to host ongoing discussions by GHIF members on developing a reference implementation for QC of WGS results

    Python 2 4 1 0 Updated Feb 16, 2023
  • sg10k-health Public

    the National Precision Medicine (NPM) program represents a whole-of-government ten-year strategy to establish precision medicine as a peak of research excellence for Singapore. Phase I (2017-2021) was a "proof-of-concept" phase demonstrating the feasibility of large-scale genomic data generation with linkage to electronic health data. A headline…

    Jupyter Notebook 1 MIT 1 0 0 Updated Sep 2, 2022
  • aws-genomics-datalake Public Forked from aws-samples/aws-genomics-datalake

    Fork from aws-samples repo: code referenced in the AWS blog post "Build a Genomics data lake on AWS".

    Jupyter Notebook 0 MIT-0 4 0 0 Updated Sep 20, 2021
  • demo-notebooks Public

    Collection of Zeppelin notebook to serve as demo for Hail usage

    0 MIT 0 0 0 Updated Jun 14, 2021
  • service-workbench-on-aws Public Forked from awslabs/service-workbench-on-aws

    A platform that provides researchers with one-click access to collaborative workspace environments operating across teams, universities, and datasets while enabling university IT stakeholders to manage, monitor, and control spending, apply security best practices, and comply with corporate governance.

    JavaScript 0 Apache-2.0 120 0 0 Updated Jun 11, 2021
View all repositories

Top languages

Loading…

Most used topics

Loading…