Merge pull request #6860 from pughlab/fix-fusion-tab-issue-6741

add a new all_cases_with_structural_variant_data to the validation process
cBioPortal · Nov 28, 2019 · 8e7d58d · 8e7d58d
2 parents 920d396 + cd1b6af
commit 8e7d58d
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diff --git a/core/src/main/java/org/mskcc/cbio/portal/model/SampleListCategory.java b/core/src/main/java/org/mskcc/cbio/portal/model/SampleListCategory.java
@@ -52,6 +52,7 @@ public enum SampleListCategory {
     ALL_CASES_WITH_MUTATION_AND_CNA_DATA("all_cases_with_mutation_and_cna_data"),
     ALL_CASES_WITH_MUTATION_AND_CNA_AND_MRNA_DATA("all_cases_with_mutation_and_cna_and_mrna_data"),
     ALL_CASES_WITH_GSVA_DATA("all_cases_with_gsva_data"),
+    ALL_CASES_WITH_SV_DATA("all_cases_with_sv_data"),
     OTHER("other");
 
     // Init the look up map.

diff --git a/core/src/main/scripts/importer/validateData.py b/core/src/main/scripts/importer/validateData.py
@@ -4253,6 +4253,7 @@ def processCaseListDirectory(caseListDir, cancerStudyId, logger,
                                 'all_cases_with_mutation_and_cna_data',
                                 'all_cases_with_mutation_and_cna_and_mrna_data',
                                 'all_cases_with_gsva_data',
+                                'all_cases_with_sv_data',
                                 'other']
 
             # If the case list category is invalid, the importer will crash.