es_udc_biocai_rbase

Or how to run modern stuff over an old CentOS-6.

A docker image to be used on biocai machines

• cafernandezlo/biocai
  • Contributing
  • Quick Start
  • Description

Contributing

If you find this image useful here's how you can help:

• Send a pull request with your kickass new features and bug fixes
• Star this repo!

Quick Start

Run docker image:

docker pull cafernandezlo/es_udc_biocai_rbase:3.6.3-1.0.0

Description

List of libraries and software:

• FROM centos:centos6
• System libraries: curl, wget, texinfo-tex, flex, zip, libgcc, glibc-devel, gcc, g++, gcc-c++, zlib, zlib-devel, bzip2, bzip2-devel, xz, xz-devel, pcre, pcre-devel, curl-devel, readline-devel, libxml2-devel, epel-release, gcc-6.3.0, R-3.6.3
• R packages (and dependencies): caret, modelgrid, doMC, dplyr, mlr, party, glmnet, MLmetrics, e1071

> sessionInfo()
R version 3.6.3 (2020-02-29)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS release 6.10 (Final)

Matrix products: default
BLAS/LAPACK: /usr/lib64/libopenblasp-r0.3.3.so

locale:
[1] C

attached base packages:
 [1] stats4    grid      parallel  stats     graphics  grDevices utils    
 [8] datasets  methods   base     

other attached packages:
 [1] mlr_2.17.1        ParamHelpers_1.14 party_1.3-4       strucchange_1.5-2
 [5] sandwich_2.5-1    zoo_1.8-8         modeltools_0.2-23 mvtnorm_1.1-0    
 [9] dplyr_0.8.5       doMC_1.3.6        iterators_1.0.12  foreach_1.5.0    
[13] modelgrid_1.1.1.0 caret_6.0-86      ggplot2_3.3.0     lattice_0.20-38  

loaded via a namespace (and not attached):
 [1] tidyselect_1.0.0     coin_1.3-1           purrr_0.3.4         
 [4] reshape2_1.4.4       splines_3.6.3        colorspace_1.4-1    
 [7] vctrs_0.2.4          generics_0.0.2       survival_3.1-8      
[10] prodlim_2019.11.13   rlang_0.4.6          ModelMetrics_1.2.2.2
[13] pillar_1.4.4         glue_1.4.0           withr_2.2.0         
[16] multcomp_1.4-13      matrixStats_0.56.0   lifecycle_0.2.0     
[19] plyr_1.8.6           lava_1.6.7           stringr_1.4.0       
[22] timeDate_3043.102    munsell_0.5.0        gtable_0.3.0        
[25] recipes_0.1.12       codetools_0.2-16     parallelMap_1.5.0   
[28] class_7.3-15         TH.data_1.0-10       Rcpp_1.0.4.6        
[31] backports_1.1.6      checkmate_2.0.0      scales_1.1.0        
[34] ipred_0.9-9          fastmatch_1.1-0      BBmisc_1.11         
[37] stringi_1.4.6        tools_3.6.3          magrittr_1.5        
[40] tibble_3.0.1         crayon_1.3.4         pkgconfig_2.0.3     
[43] MASS_7.3-51.5        ellipsis_0.3.0       libcoin_1.0-5       
[46] Matrix_1.2-18        data.table_1.12.8    pROC_1.16.2         
[49] lubridate_1.7.8      gower_0.2.1          assertthat_0.2.1    
[52] R6_2.4.1             rpart_4.1-15         nnet_7.3-12         
[55] nlme_3.1-144         compiler_3.6.3