New cell lines from DepMap 23q2 release #8
Comments
|
Hi Mike
Here is the situation regarding these 5 DepMap cell line entries:
1) Myla
There are 11 different Myla cell lines, so here there is not enough
information to know which one it is.
2)|U251MGDM HSRRB
Currently I have not obtained from DepMap any information on how this
cell line is derived from U251MG. So until this is obtained there is no
way I can create that entry.
|3) This was prepared for the next release and will be CVCL_C8YB
4) and 5)
A few weeks ago I received from|Alejandro Sweet-Cordero, the
correspondance between is published "OS" series of cell lines and the
old "PSS" designations.
So:
PSS008=OS052 and is CVCL_C8FR
PSS131R=OS384 and is CVCL_C8FU
Best
Amos
|
…On 22.08.2023 18:48, Michael Steinbaugh wrote:
Hi Cellosaurus team,
I noticed that there are 5 cell lines now available at DepMap that are
not currently annotated in Cellosaurus. Can we work on adding them?
|DepMap ID Name Source ACH-001134 MYLA Academic lab ACH-001172
U251MGDM HSRRB via Bandhyopadhyay (Broad) ACH-002002 A375SKINCJ2 Cory
Johannessen (Broad) ACH-002471 PSS008 Alejandro Sweet-Cordero (UCSF)
ACH-002834 PSS131R Alejandro Sweet-Cordero (UCSF) |
Best,
Mike
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Hi Mike<br>
<br>
Here is the situation regarding these 5 DepMap cell line entries:<br>
<br>
1) Myla<br>
<br>
There are 11 different Myla cell lines, so here there is not enough
information to know which one it is.<br>
<br>
2)<code class="notranslate"> U251MGDM HSRRB<br>
<br>
Currently I have not obtained from DepMap any information on how
this cell line is derived from U251MG. So until this is obtained
there is no way I can create that entry.<br>
<br>
</code>3) This was prepared for the next release and will be
CVCL_C8YB<br>
<br>
4) and 5)<br>
<br>
A few weeks ago I received from<code class="notranslate"> Alejandro
Sweet-Cordero, the correspondance between is published "OS" series
of cell lines and the old "PSS" designations.<br>
<br>
So:<br>
<br>
PSS008=OS052 and is CVCL_C8FR<br>
PSS131R=OS384 and is CVCL_C8FU<br>
<br>
Best<br>
Amos<br>
<br>
</code>
<div class="moz-cite-prefix">On 22.08.2023 18:48, Michael Steinbaugh
wrote:<br>
</div>
<blockquote type="cite" ***@***.***">
<p dir="auto">Hi Cellosaurus team,</p>
<p dir="auto">I noticed that there are 5 cell lines now available
at DepMap that are not currently annotated in Cellosaurus. Can
we work on adding them?</p>
<pre class="notranslate"><code class="notranslate">DepMap ID Name Source
ACH-001134 MYLA Academic lab
ACH-001172 U251MGDM HSRRB via Bandhyopadhyay (Broad)
ACH-002002 A375SKINCJ2 Cory Johannessen (Broad)
ACH-002471 PSS008 Alejandro Sweet-Cordero (UCSF)
ACH-002834 PSS131R Alejandro Sweet-Cordero (UCSF)
</code></pre>
<p dir="auto">Best,<br>
Mike</p>
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Professor at the Faculty of Medicine of the University of Geneva
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@AmosBairoch Fantastic, thanks for the update. I'll see if I can provide more useful information on Myla and U251MGDM. |
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@AmosBairoch Will do some additional digging regarding MYLA but I think this is safe to close for now |
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Hi Cellosaurus team,
I noticed that there are 5 cell lines now available at DepMap that are not currently annotated in Cellosaurus. Can we work on adding them?
Best,
Mike
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