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Mapping rdfization #51

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Mapping rdfization #51

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Commits on Nov 1, 2020

  1. ignoring analytic tests

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  2. removing unneeded tests

    @callahantiff
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  3. reorganizing branch

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Commits on Nov 2, 2020

  1. adding func to process mapping data

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  2. adding funcs to process grouped mapping data

    @callahantiff
    callahantiff committed Nov 2, 2020
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  3. adding missing data

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  4. adding more missing data

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  5. improving func assumptions

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Commits on Nov 3, 2020

  1. relaxing assumptions

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Commits on Nov 4, 2020

  1. improving concept-level logic

    @callahantiff
    callahantiff committed Nov 4, 2020
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  2. completing draft of map results

    @callahantiff
    callahantiff committed Nov 4, 2020
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Commits on Nov 5, 2020

  1. added rescaling func

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  2. adding init for analyses repo

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Commits on Nov 6, 2020

  1. first draft pass

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Commits on Nov 7, 2020

  1. updating plot information

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  2. adding funcs to process concept prevalence data

    @callahantiff
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  3. adding notbeook for mapping validation

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Commits on Nov 8, 2020

  1. adding error analysis func

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Commits on Nov 9, 2020

  1. updating notebook title

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  2. adding funcs to process missing concept sets

    @callahantiff
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Commits on Nov 11, 2020

  1. fixing classifies missing concept assumptions

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  2. completed first draft of validation

    @callahantiff
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  3. adding weighted sum

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Commits on Nov 12, 2020

  1. adding ro relation doc

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  2. adding readme with details on mapping kr

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Commits on Nov 14, 2020

  1. removing period

    @callahantiff
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  2. adding new script for semantic map processing

    @callahantiff
    callahantiff committed Nov 14, 2020
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  3. adding white space at end of file

    @callahantiff
    callahantiff committed Nov 14, 2020
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  4. adding class constructor tests

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    callahantiff committed Nov 14, 2020
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  5. 2/3 validation draft

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  6. cleaning up imports

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    callahantiff committed Nov 14, 2020
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Commits on Nov 15, 2020

  1. adding recursive ancestor finding func

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Commits on Nov 16, 2020

  1. refreshing output

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  2. adding ontology merging function

    @callahantiff
    callahantiff committed Nov 16, 2020
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  3. adding ontology merging test

    @callahantiff
    callahantiff committed Nov 16, 2020
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  4. adding ontology loading func and test

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Commits on Nov 19, 2020

  1. re-generated output

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Commits on Nov 20, 2020

  1. fixed typo in function

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    callahantiff committed Nov 20, 2020
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Commits on Nov 27, 2020

  1. updates the ontology ancestor finding alg

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Commits on Nov 28, 2020

  1. reordered/updated tests to match class parameters

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  2. adding logic for domain input

    @callahantiff
    callahantiff committed Nov 28, 2020
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  3. removing maping_semantics from gitignore

    @callahantiff
    callahantiff committed Nov 28, 2020
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  4. updating ro terms

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  5. providing additional detail to README

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Commits on Nov 29, 2020

  1. overhauled faulty tests

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  2. adding test for dta org method

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Commits on Nov 30, 2020

  1. adding complementOf method and test

    @callahantiff
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  2. added class construction method and test

    @callahantiff
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  3. added method and tests to format ontology file output 

    this commit also adds a new empty testing file
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  4. adding method to serialize semantic representations

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Commits on Dec 1, 2020

  1. adding function and tests to add metadata

    @callahantiff
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  2. updated merging method

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  3. light updates

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Commits on Dec 3, 2020

  1. adding ontology dictionary input parameter and tests

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  2. updating serialization method

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Commits on Dec 8, 2020

  1. remove irrelevant comment

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  2. updating logic extract method and tests

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Commits on Dec 11, 2020

  1. added new data utils method

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  2. updated data util tests

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  3. refined overlapping span method

    @callahantiff
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  4. overhaul overlap method

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  5. cleaned up logic extraction method

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Commits on Dec 12, 2020

  1. had index output to overlap method

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  2. overhauled class construction method

    @callahantiff
    callahantiff committed Dec 12, 2020
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  3. satisfy typing check

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  4. typing checkand test updates

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Commits on Dec 13, 2020

  1. added method to clean ontologies

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  2. incorporating ontology cleaning method

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  3. adding owl output to mapping_semantics directory

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  4. adding print statement

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    callahantiff committed Dec 13, 2020
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  5. cleaned up comments

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Commits on Dec 15, 2020

  1. updated cleaning protocol

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  2. complete single construction draft

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  3. adding regex

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  4. fixed broken assumptions

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  5. moving file

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  6. sig assumption overhaul

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  7. adding openpxyl to setup requirements

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  8. updating requirements

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  9. rolling back some modules

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  10. again...

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  11. updating read_excel for new pandas version

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  12. strengthened filepaths

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  13. re-working file shutil

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  14. remove duplicate code chunk

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  15. adding comment

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  16. chasing Travis error

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  17. trying updated symlinks argument 

    https://stackoverflow.com/questions/4847615/copying-a-symbolic-link-in-python
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  18. running experiment

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  19. swapping out copyfile for copy2

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  20. remade erroneous write directory

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Commits on Dec 16, 2020

  1. adding print statements to debug

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  2. adding print statements to debug...again

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  3. adding new data and changing last move argument

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  4. reworking shutil.copy2 --> os.rename

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  5. removing old code

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Commits on Dec 18, 2020

  1. github actions hotfix from master

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  2. badge reorg

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  3. moving data source

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  4. improving paths

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  5. fixing broken tests

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Commits on Dec 19, 2020

  1. adding print statement

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  2. adding more print statement

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  3. adding more print statements...again

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  4. replacing shutil.copyfile with shutil.copy

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  5. trying something else

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  6. moving print statement

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  7. trying other path

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  8. approach revamp

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  9. approach revamp ... take 2

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  10. attempt to resolve semantic typing errors

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  11. attempt to resolve semantic typing errors ... take 2

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  12. fixing typing errors

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  13. removing dead code

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  14. fixing badge layout

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Commits on Dec 21, 2020

  1. updating class comments

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  2. updating comments

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    callahantiff committed Dec 21, 2020
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  3. cleaning up line spacing

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    callahantiff committed Dec 21, 2020
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  4. cleaned up comments and error assertions

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    callahantiff committed Dec 21, 2020
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  5. fixing code smells

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    callahantiff committed Dec 21, 2020
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  6. adding missing argument to sonar properties

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    callahantiff committed Dec 21, 2020
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Commits on Dec 22, 2020

  1. polishing actions requirements

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    callahantiff committed Dec 22, 2020
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  2. re-arranging badges

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    callahantiff committed Dec 22, 2020
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  3. fixing badge order

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    callahantiff committed Dec 22, 2020
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Commits on Dec 25, 2020

  1. removing redundant closure

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    callahantiff committed Dec 25, 2020
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Commits on Dec 31, 2020

  1. adding mypy badge

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    callahantiff committed Dec 31, 2020
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