This repository contains the scripts required to re-create the MARC Phase 2 analyses described in:
Jain M, Tyson JR, Loose M, Ip CLC, Eccles DA, O'Grady J, Malla S, Leggett RM, Wallerman O, Jansen HJ, Zalunin V, Birney E, Brown BL, Snutch TP, Olsen HE, MinION Analysis and Reference Consortium. MinION Analysis and Reference Consortium: Phase 2 data release and analysis of R9.0 chemistry (F1000 Research, in submission)
Download a copy of this repository:
cd /PATH/TO/YOUR/THIRD/PARTY/SOFTWARE/DIR
then make a copy of the files here, uncompressing if required.
The study was an analysis of 5 experiments:
- 1x 2D library run on R7.4 chemistry (data from the MARC Phase 1 study)
- 2x 2D libraries run on R9.0 chemistry (new data produced for this study)
- 2x 1D libraries run on R9.0 chemistry (new data produced this study)
The Revision1/README.md file describes the third-party software required, download the raw experimental data and configure and run the analysis scripts.
For support, comments or bug reports:
- Camilla Ip (camilla.ip@well.ox.ac.uk)
- Miten Jain (miten@soe.ucsc.edu)