caporaso-lab

Repositories

• genome-sampler
  Python BSD-3-Clause 5 1 12 1 Updated Jun 6, 2020

• caporaso-lab.github.io

  Lab website
  HTML BSD-3-Clause 17 1 5 3 Updated Jun 4, 2020

• az-covid-1

  Scripts supporting an initial investigation of SARS-CoV-2 genomes from Arizona
  Python BSD-3-Clause 0 0 0 0 Updated May 14, 2020

• teaching-website-source

  Sphinx source for my teaching website
  Python 0 0 0 0 Updated May 8, 2020

• exmp-paper1

  Data supporting the NAU EXMP-1 and EXMP-2 (EXercise Microbiome Projects)
  Jupyter Notebook BSD-3-Clause 0 0 0 0 Updated Apr 28, 2020

• q2-phylogenomics

  Phylogenomics toolkit and pipelines
  Python BSD-3-Clause 3 0 2 0 Updated Apr 15, 2020

• pretrained-feature-classifiers
  Shell BSD-3-Clause 2 0 3 0 Updated Feb 17, 2020

• tax-credit-data

  raw data from tax-credit project
  Jupyter Notebook BSD-3-Clause 4 3 0 0 Updated Sep 19, 2019

• ecuador-leptospira
  BSD-3-Clause 0 1 0 0 Updated Aug 16, 2019

• code-of-conduct
  1 1 0 0 Updated May 14, 2019

• mockrobiota

  A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.
  Python BSD-3-Clause 25 51 8 1 Updated May 14, 2019

• sc18-poster
  TeX BSD-3-Clause 3 0 0 0 Updated Mar 29, 2019

• longitudinal-notebooks
  Jupyter Notebook 3 7 0 0 Updated Feb 26, 2019

• crc-udca2

  Analyses for UDCA Cancer Research submission
  Jupyter Notebook BSD-3-Clause 1 0 0 0 Updated Feb 13, 2019

• tax-credit-code

  Microbiome benchmarking code and jupyter notebooks from the tax-credit project
  Python BSD-3-Clause 4 0 0 1 Updated Dec 6, 2018

• sample-classifier-ms

  Manuscript describing q2-sample-classifier
  TeX BSD-3-Clause 1 0 0 0 Updated Aug 14, 2018

• SurveySync

  Google Sheets Add-On to facilitate sync and validation of 3rd-party survey data
  JavaScript BSD-3-Clause 2 2 8 0 Updated Jun 29, 2018

• autism-fmt1
  Jupyter Notebook 6 6 9 0 Updated Jun 5, 2018

• tax-credit

  A repository for storing code and data related to a systematic comparison of short read taxonomy assignment tools
  Jupyter Notebook BSD-3-Clause 8 13 12 (1 issue needs help) 1 Updated Oct 11, 2017

• q2devtools
  Python BSD-3-Clause 4 0 0 0 Updated Jul 26, 2017

• office-microbes

  Notebooks and code for our Sloan office microbiome project.
  Jupyter Notebook BSD-3-Clause 0 1 0 0 Updated Apr 1, 2016

• cloaked-octo-ninja

  Comparative analysis of high-level OTU picking protocols
  Shell BSD-3-Clause 1 6 0 0 Updated Aug 21, 2014

• student-microbiome-project

  Central repository for data and analysis tools for the StudentMicrobiomeProject.
  Python 3 8 15 0 Updated Oct 3, 2013