caporaso-lab

tax-credit-data

raw data from tax-credit project

Jupyter Notebook 2 4 BSD-3-Clause Updated Jul 19, 2018

An-Introduction-To-Applied-Bioinformatics

Interactive lessons in bioinformatics.

Python 298 156 Updated Jul 17, 2018

caporaso-lab.github.io

Lab website

HTML 1 13 BSD-3-Clause Updated Jul 3, 2018

SurveySync

Google Sheets Add-On to facilitate sync and validation of 3rd-party survey data

JavaScript 2 2 BSD-3-Clause Updated Jun 29, 2018

tax-credit-code

Microbiome benchmarking code and jupyter notebooks from the tax-credit project

Python 4 BSD-3-Clause Updated Jun 28, 2018

autism-fmt1

Jupyter Notebook 2 2 Updated Jun 5, 2018

teaching-website-source

Sphinx source for my teaching website

Python Updated Mar 7, 2018

mockrobiota

A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.

Python 35 14 BSD-3-Clause Updated Mar 5, 2018

build-iab

Prototyping project structure for An Introduction to Applied Bioinformatics

Python 1 BSD-3-Clause Updated Jan 22, 2018

longitudinal-notebooks

Jupyter Notebook 1 1 Updated Nov 16, 2017

tax-credit

A repository for storing code and data related to a systematic comparison of short read taxonomy assignment tools

Jupyter Notebook 11 7 BSD-3-Clause 1 issue needs help Updated Oct 11, 2017

q2devtools

Python 4 BSD-3-Clause Updated Jul 26, 2017

biab-provisioning

Ansible playbook for setting up build-iab

Shell 1 BSD-3-Clause Updated Apr 11, 2017

office-microbes

Notebooks and code for our Sloan office microbiome project.

Jupyter Notebook BSD-3-Clause Updated Apr 1, 2016

cloaked-octo-ninja

Comparative analysis of high-level OTU picking protocols

Shell 6 1 BSD-3-Clause Updated Aug 21, 2014

student-microbiome-project

Central repository for data and analysis tools for the StudentMicrobiomeProject.

Python 6 3 Updated Oct 3, 2013