Pinned repositories

  1. An-Introduction-To-Applied-Bioinformatics

    Interactive lessons in bioinformatics.

    Python 298 156

  2. mockrobiota

    A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.

    Python 35 14

  3. autism-fmt1

    Jupyter Notebook 2 2

  • raw data from tax-credit project

    Jupyter Notebook 2 4 BSD-3-Clause Updated Jul 19, 2018
  • Interactive lessons in bioinformatics.

    Python 298 156 Updated Jul 17, 2018
  • Lab website

    HTML 1 13 BSD-3-Clause Updated Jul 3, 2018
  • Google Sheets Add-On to facilitate sync and validation of 3rd-party survey data

    JavaScript 2 2 BSD-3-Clause Updated Jun 29, 2018
  • Microbiome benchmarking code and jupyter notebooks from the tax-credit project

    Python 4 BSD-3-Clause Updated Jun 28, 2018
  • Jupyter Notebook 2 2 Updated Jun 5, 2018
  • Sphinx source for my teaching website

    Python Updated Mar 7, 2018
  • A public resource for microbiome bioinformatics benchmarking using artificially constructed (i.e., mock) communities.

    Python 35 14 BSD-3-Clause Updated Mar 5, 2018
  • Prototyping project structure for An Introduction to Applied Bioinformatics

    Python 1 BSD-3-Clause Updated Jan 22, 2018
  • Jupyter Notebook 1 1 Updated Nov 16, 2017
  • A repository for storing code and data related to a systematic comparison of short read taxonomy assignment tools

    Jupyter Notebook 11 7 BSD-3-Clause 1 issue needs help Updated Oct 11, 2017
  • Python 4 BSD-3-Clause Updated Jul 26, 2017
  • Ansible playbook for setting up build-iab

    Shell 1 BSD-3-Clause Updated Apr 11, 2017
  • Notebooks and code for our Sloan office microbiome project.

    Jupyter Notebook BSD-3-Clause Updated Apr 1, 2016
  • Comparative analysis of high-level OTU picking protocols

    Shell 6 1 BSD-3-Clause Updated Aug 21, 2014
  • Central repository for data and analysis tools for the StudentMicrobiomeProject.

    Python 6 3 Updated Oct 3, 2013