added blat-nt input and output

map_reads_to_reference/blat-nt_mapped/observation_map.txt

@@ -0,0 +1,5 @@
+r4	s1_4
+r5	s1_5	s1_6
+r1	s1_1
+r2	s2_2
+r3	s1_3

map_reads_to_reference/blat-nt_mapped/observation_table.biom

@@ -0,0 +1 @@
+{"rows": [{"id": "r4", "metadata": null}, {"id": "r5", "metadata": null}, {"id": "r1", "metadata": null}, {"id": "r2", "metadata": null}, {"id": "r3", "metadata": null}], "format": "Biological Observation Matrix 1.0.0", "data": [[0, 0, 1], [1, 0, 2], [2, 0, 1], [3, 1, 1], [4, 0, 1]], "columns": [{"id": "s1", "metadata": null}, {"id": "s2", "metadata": null}], "generated_by": "QIIME 1.5.0-dev, svn revision 3265", "matrix_type": "sparse", "shape": [5, 2], "format_url": "http://biom-format.org", "date": "2012-09-12T20:48:37.629092", "type": "OTU table", "id": null, "matrix_element_type": "int"}

map_reads_to_reference/blat-nt_mapped/observation_table.log

@@ -0,0 +1,6 @@
+s1_1	r1	100.00	66	0	0	1	66	1	66	3.3e-30	129.0
+s2_2	r2	100.00	1131	0	0	1	1131	1	1131	0.0e+00	2225.0
+s1_3	r3	100.00	348	0	0	1	348	1	348	2.4e-196	681.0
+s1_4	r4	100.00	348	0	0	1	348	1	348	2.4e-196	681.0
+s1_5	r5	99.91	1131	1	0	1	1131	2	1132	0.0e+00	2222.0
+s1_6	r5	100.00	1132	0	0	1	1132	1	1132	0.0e+00	2227.0

map_reads_to_reference/blat-nt_mapped/out.bl9

@@ -0,0 +1,35 @@
+# BLAT 34x13 [2009/02/26]
+# Query: s1_1
+# Database: /Users/caporaso/Dropbox/code/qiime_test_data/map_reads_to_reference/refseqs_nt.fasta
+# Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score
+s1_1	r1	100.00	66	0	0	1	66	1	66	3.3e-30	129.0
+# BLAT 34x13 [2009/02/26]
+# Query: s2_2
+# Database: /Users/caporaso/Dropbox/code/qiime_test_data/map_reads_to_reference/refseqs_nt.fasta
+# Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score
+s2_2	r2	100.00	1131	0	0	1	1131	1	1131	0.0e+00	2225.0
+s2_2	r5	99.91	1127	1	0	1	1127	2	1128	0.0e+00	2215.0
+# BLAT 34x13 [2009/02/26]
+# Query: s1_3
+# Database: /Users/caporaso/Dropbox/code/qiime_test_data/map_reads_to_reference/refseqs_nt.fasta
+# Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score
+s1_3	r3	100.00	348	0	0	1	348	1	348	2.4e-196	681.0
+s1_3	r4	99.13	346	3	0	1	346	1	346	9.1e-192	666.0
+# BLAT 34x13 [2009/02/26]
+# Query: s1_4
+# Database: /Users/caporaso/Dropbox/code/qiime_test_data/map_reads_to_reference/refseqs_nt.fasta
+# Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score
+s1_4	r4	100.00	348	0	0	1	348	1	348	2.4e-196	681.0
+s1_4	r3	99.13	346	3	0	1	346	1	346	9.1e-192	666.0
+# BLAT 34x13 [2009/02/26]
+# Query: s1_5
+# Database: /Users/caporaso/Dropbox/code/qiime_test_data/map_reads_to_reference/refseqs_nt.fasta
+# Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score
+s1_5	r5	99.91	1131	1	0	1	1131	2	1132	0.0e+00	2222.0
+s1_5	r2	100.00	1127	0	0	1	1127	1	1127	0.0e+00	2217.0
+# BLAT 34x13 [2009/02/26]
+# Query: s1_6
+# Database: /Users/caporaso/Dropbox/code/qiime_test_data/map_reads_to_reference/refseqs_nt.fasta
+# Fields: Query id, Subject id, % identity, alignment length, mismatches, gap openings, q. start, q. end, s. start, s. end, e-value, bit score
+s1_6	r5	100.00	1132	0	0	1	1132	1	1132	0.0e+00	2227.0
+s1_6	r2	99.91	1127	1	0	2	1128	1	1127	0.0e+00	2215.0