Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
fixed source seqs and taxonomy for mock 9 and 10 (#71)
* fixed source seqs and taxonomy for mock 9 and 10 * fixed expected sequences
- Loading branch information
1 parent
44313a7
commit 9e7fcc1
Showing
12 changed files
with
172 additions
and
120 deletions.
There are no files selected for viewing
Large diffs are not rendered by default.
Oops, something went wrong.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,17 +1,17 @@ | ||
| Taxonomy Mock.1 Mock.2 Mock.3 | ||
| Eukaryota;Fungi;Ascomycota;Saccharomycetes;Saccharomycetales;Incertae_sedis;Candida;Candida_catenulata 0.0625 0.0625 0.0625 | ||
| Eukaryota;Fungi;Ascomycota;Saccharomycetes;Saccharomycetales;Incertae_sedis;Debaryomyces;Debaryomyces_hansenii 0.0625 0.0625 0.0625 | ||
| Eukaryota;Fungi;Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Galactomyces;Galactomyces_geotrichum_Type_1 0.0625 0.0625 0.0625 | ||
| Eukaryota;Fungi;Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Galactomyces;Galactomyces_geotrichum_Type_2 0.0625 0.0625 0.0625 | ||
| Eukaryota;Fungi;Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Galactomyces;Galactomyces_geotrichum_Type_3 0.0625 0.0625 0.0625 | ||
| Eukaryota;Fungi;Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Galactomyces;Galactomyces_geotrichum_Type_4 0.0625 0.0625 0.0625 | ||
| Saccharomycotina;Saccharomycetes;Saccharomycetidae;Saccharomycetales;Saccharomycetaceae;Kluyveromyces;Kluyveromyces_lactis 0.0625 0.0625 0.0625 | ||
| Eukaryota;Fungi;Ascomycota;Saccharomycetes;Saccharomycetales;Incertae_sedis;Candida;Candida_utilis 0.0625 0.0625 0.0625 | ||
| Eukaryota;Fungi;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygosaccharomyces;Zygosaccharomyces_rouxii 0.0625 0.0625 0.0625 | ||
| Eukaryota;Fungi;Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia;Pichia_burtonii 0.0625 0.0625 0.0625 | ||
| Eukaryota;Fungi;Ascomycota;Saccharomycetes;Saccharomycetales;Incertae_sedis;Candida;Candida_krusei 0.0625 0.0625 0.0625 | ||
| Eukaryota;Fungi;Ascomycota;Eurotiomycetes;Eurotiales;Trichocomaceae;Penicillium;Penicillium_roqueforti 0.0625 0.0625 0.0625 | ||
| Eukaryota;Fungi;Ascomycota;Eurotiomycetes;Eurotiales;Trichocomaceae;Penicillium;Penicillium_alli 0.0625 0.0625 0.0625 | ||
| Eukaryota;Fungi;Ascomycota;Eurotiomycetes;Eurotiales;Trichocomaceae;Penicillium;Penicillium_commune 0.0625 0.0625 0.0625 | ||
| Eukaryota;Fungi;Ascomycota;Sordariomycetes;Hypocreales;Nectriaceae;Fusarium;Fusarium_domesticum 0.0625 0.0625 0.0625 | ||
| Eukaryota;Fungi;Ascomycota;Sordariomycetes;Microascales;Microascaceae;Microascus;Scopulariopsis_fusca 0.0625 0.0625 0.0625 | ||
| Candida;Candida_catenulata 0.0625 0.0625 0.0625 | ||
| Debaryomyces_hansenii 0.0625 0.0625 0.0625 | ||
| Dipodascus_geotrichum_Type_1 0.0625 0.0625 0.0625 | ||
| Dipodascus_geotrichum_Type_2 0.0625 0.0625 0.0625 | ||
| Dipodascus_geotrichum_Type_3 0.0625 0.0625 0.0625 | ||
| Dipodascus_geotrichum_Type_4 0.0625 0.0625 0.0625 | ||
| Kluyveromyces_lactis 0.0625 0.0625 0.0625 | ||
| Cyberlindnera_jadinii 0.0625 0.0625 0.0625 | ||
| Zygosaccharomyces_rouxii 0.0625 0.0625 0.0625 | ||
| Hyphopichia_burtonii 0.0625 0.0625 0.0625 | ||
| Pichia_kudriavzevii 0.0625 0.0625 0.0625 | ||
| Penicillium_roqueforti 0.0625 0.0625 0.0625 | ||
| Penicillium_allii 0.0625 0.0625 0.0625 | ||
| Penicillium_commune 0.0625 0.0625 0.0625 | ||
| Fusarium_domesticum 0.0625 0.0625 0.0625 | ||
| Scopulariopsis_fusca 0.0625 0.0625 0.0625 |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,4 +1,6 @@ | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetaceae;g__Kluyveromyces;s__Kluyveromyces_lactis SH018703.07FU_AY046213_refs | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Dipodascaceae;g__Dipodascus;s__Dipodascus_geotrichum SH004314.07FU_JN974286_reps | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetales_fam_Incertae_sedis;g__Candida;s__Candida_catenulata SH002010.07FU_GU246267_refs | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetaceae;g__Kluyveromyces;s__Kluyveromyces_lactis SH018703.07FU_AY046213_refs | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Pichiaceae;g__Hyphopichia;s__Hyphopichia_burtonii SH020067.07FU_EU714323_refs | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetaceae;g__Zygosaccharomyces;s__Zygosaccharomyces_rouxii SH007444.07FU_AY046189_refs SH007445.07FU_AJ229071_reps SH027480.07FU_AM943657_reps SH027481.07FU_HE664090_reps | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetales_fam_Incertae_sedis;g__Cyberlindnera;s__Cyberlindnera_jadinii SH011095.07FU_DQ249199_refs | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Dipodascaceae;g__Dipodascus;s__Dipodascus_geotrichum SH004314.07FU_JN974286_reps |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,11 +1,12 @@ | ||
| Taxonomy Mock.1 Mock.2 Mock.3 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetales_fam_Incertae_sedis;g__Candida;s__ 0.1250000000 0.1250000000 0.1250000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetales_fam_Incertae_sedis;g__Debaryomyces;s__ 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetaceae;g__Kluyveromyces;s__Kluyveromyces_lactis 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Dipodascaceae;g__Dipodascus;s__Dipodascus_geotrichum 0.2500000000 0.2500000000 0.2500000000 | ||
| k__Fungi;p__Ascomycota;c__Sordariomycetes;o__Hypocreales;f__Nectriaceae;g__Fusarium; s__ 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Pichiaceae;g__Pichia; s__ 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetales_fam_Incertae_sedis;g__Candida;s__Candida_catenulata 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Sordariomycetes;o__Hypocreales;f__Nectriaceae;g__Fusarium;s__ 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Eurotiomycetes;o__Eurotiales;f__Trichocomaceae;g__Penicillium;s__ 0.1875000000 0.1875000000 0.1875000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Pichiaceae;g__Pichia;s__ 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Sordariomycetes;o__Microascales;f__Microascaceae;g__Scopulariopsis; s__ 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetaceae;g__Kluyveromyces;s__Kluyveromyces_lactis 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Pichiaceae;g__Hyphopichia;s__Hyphopichia_burtonii 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetaceae;g__Zygosaccharomyces;s__Zygosaccharomyces_rouxii 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Sordariomycetes;o__Microascales;f__Microascaceae;g__Scopulariopsis;s__ 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetales_fam_Incertae_sedis;g__Cyberlindnera;s__Cyberlindnera_jadinii 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Eurotiomycetes;o__Eurotiales;f__Trichocomaceae;g__Penicillium; s__ 0.1875000000 0.1875000000 0.1875000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Dipodascaceae;g__Dipodascus;s__Dipodascus_geotrichum 0.2500000000 0.2500000000 0.2500000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetales_fam_Incertae_sedis;g__Debaryomyces; s__ 0.0625000000 0.0625000000 0.0625000000 |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,6 +1,8 @@ | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetaceae;g__Zygosaccharomyces;s__Zygosaccharomyces_rouxii SH090412.07FU_AY046189_refs SH125738.07FU_AM943657_reps SH125739.07FU_HE664090_reps SH090418.07FU_AJ229071_reps | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Dipodascaceae;g__Dipodascus;s__Dipodascus_geotrichum SH084334.07FU_JQ668727_reps SH084338.07FU_DQ907937_reps SH084342.07FU_KJ706602_reps SH084341.07FU_JN974286_reps SH544902.07FU_KT921198_reps | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetaceae;g__Kluyveromyces;s__Kluyveromyces_lactis SH110925.07FU_AY046213_refs SH110927.07FU_AY338968_reps SH110926.07FU_KJ706612_reps | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetales_fam_Incertae_sedis;g__Debaryomyces;s__Debaryomyces_hansenii SH096301.07FU_KJ706598_reps SH096302.07FU_KJ706595_reps | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetaceae;g__Zygosaccharomyces;s__Zygosaccharomyces_rouxii SH090412.07FU_AY046189_refs SH125738.07FU_AM943657_reps SH125739.07FU_HE664090_reps SH090418.07FU_AJ229071_reps | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Pichiaceae;g__Hyphopichia;s__Hyphopichia_burtonii SH113140.07FU_EU714323_refs SH542548.07FU_KP638737_reps | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetales_fam_Incertae_sedis;g__Candida;s__Candida_catenulata SH080023.07FU_GU246267_refs SH080024.07FU_KJ706553_reps | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetales_fam_Incertae_sedis;g__Cyberlindnera;s__Cyberlindnera_jadinii SH097587.07FU_DQ249199_refs SH097588.07FU_AB534605_reps | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetales_fam_Incertae_sedis;g__Debaryomyces;s__Debaryomyces_hansenii SH096301.07FU_KJ706598_reps SH096302.07FU_KJ706595_reps | ||
| k__Fungi;p__Ascomycota;c__Eurotiomycetes;o__Eurotiales;f__Trichocomaceae;g__Penicillium;s__Penicillium_commune SH107631.07FU_GU319999_reps |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,12 +1,13 @@ | ||
| Taxonomy Mock.1 Mock.2 Mock.3 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetaceae;g__Zygosaccharomyces;s__Zygosaccharomyces_rouxii 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Eurotiomycetes;o__Eurotiales;f__Trichocomaceae;g__Penicillium; s__ 0.1250000000 0.1250000000 0.1250000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Dipodascaceae;g__Dipodascus;s__Dipodascus_geotrichum 0.2500000000 0.2500000000 0.2500000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetales_fam_Incertae_sedis;g__Candida;s__ 0.1250000000 0.1250000000 0.1250000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetaceae;g__Kluyveromyces;s__Kluyveromyces_lactis 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Pichiaceae;g__Pichia;s__ 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetales_fam_Incertae_sedis;g__Debaryomyces;s__Debaryomyces_hansenii 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetaceae;g__Zygosaccharomyces;s__Zygosaccharomyces_rouxii 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Pichiaceae;g__Hyphopichia;s__Hyphopichia_burtonii 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetales_fam_Incertae_sedis;g__Candida;s__Candida_catenulata 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Sordariomycetes;o__Hypocreales;f__Nectriaceae;g__Fusarium; s__ 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetales_fam_Incertae_sedis;g__Cyberlindnera;s__Cyberlindnera_jadinii 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Saccharomycetales_fam_Incertae_sedis;g__Debaryomyces;s__Debaryomyces_hansenii 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Saccharomycetes;o__Saccharomycetales;f__Pichiaceae;g__Pichia; s__ 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Sordariomycetes;o__Microascales;f__Microascaceae;g__Scopulariopsis; s__ 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Eurotiomycetes;o__Eurotiales;f__Trichocomaceae;g__Penicillium;s__Penicillium_commune 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Sordariomycetes;o__Microascales;f__Microascaceae;g__Scopulariopsis;s__ 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Sordariomycetes;o__Hypocreales;f__Nectriaceae;g__Fusarium;s__ 0.0625000000 0.0625000000 0.0625000000 | ||
| k__Fungi;p__Ascomycota;c__Eurotiomycetes;o__Eurotiales;f__Trichocomaceae;g__Penicillium;s__ 0.1250000000 0.1250000000 0.1250000000 |
Oops, something went wrong.