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Variability within individuals based on gender

DDomogala3 edited this page Mar 13, 2013 · 35 revisions

tongue_only_weighted

filter_distance_matrix.py -i /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/tongue_only/weighted_unifrac_dm.tongue_ts_only.txt -m /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/new_smp_map_2.txt -s "Gender" -t /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/tongue_only/otu_table_even10000_tongue.ts_only.biom -o /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/tongue_only/weighted_unifrac_dm.tongue_ts_only_gender_only.txt

tongue_only_unweighted

filter_distance_matrix.py -i /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/tongue_only/unweighted_unifrac_dm.tongue_ts_only.txt -m /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/new_smp_map_2.txt -s "Gender" -t /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/tongue_only/otu_table_even10000_tongue.ts_only.biom -o /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/tongue_only/unweighted_unifrac_dm.tongue_ts_only_gender.txt

forehead_unweighted

filter_distance_matrix.py -i /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/forehead_only/unweighted_unifrac_dm.forehead_ts_only.txt -m /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/new_smp_map_2.txt -s "Gender" -t /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/forehead_only/otu_table_even10000_forehead.ts_only.biom -o /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/forehead_only/unweighted_unifrac_dm.forehead_ts_only_gender.txt

forehead_weighted

filter_distance_matrix.py -i /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/forehead_only/weighted_unifrac_dm.forehead_ts_only.txt -m /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/new_smp_map_2.txt -s "Gender" -t /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/forehead_only/otu_table_even10000_forehead.ts_only.biom -o /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/forehead_only/weighted_unifrac_dm.forehead_ts_only_gender_only.txt

gut_unweighted

filter_distance_matrix.py -i /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/gut_only/unweighted_unifrac_dm.gut_ts_only.txt -m /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/new_smp_map_2.txt -s "Gender" -t /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/gut_only/otu_table_even10000_gut.ts_only.biom -o /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/gut_only/unweighted_unifrac_dm.gut_ts_only_gender.txt

gut_weighted

filter_distance_matrix.py -i /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/gut_only/weighted_unifrac_dm.gut_ts_only.txt -m /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/new_smp_map_2.txt -s "Gender" -t /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/gut_only/otu_table_even10000_gut.ts_only.biom -o /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/gut_only/weighted_unifrac_dm.gut_ts_only_gender_only.txt

palm_weighted

filter_distance_matrix.py -i /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/palm_only/weighted_unifrac_dm.palm_ts_only.txt -m /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/new_smp_map_2.txt -s "Gender" -t /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/palm_only/otu_table_even10000_palm.ts_only.biom -o /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/palm_only/weighted_unifrac_dm.palm_ts_only_gender_only.txt


palm_unweighted

filter_distance_matrix.py -i /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/palm_only/unweighted_unifrac_dm.palm_ts_only.txt -m /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/new_smp_map_2.txt -s "Gender" -t /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/palm_only/otu_table_even10000_palm.ts_only.biom -o /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/palm_only/unweighted_unifrac_dm.palm_ts_only_gender.txt