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Variability within individuals based on gender
DDomogala3 edited this page Mar 13, 2013
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35 revisions
tongue_only_weighted
filter_distance_matrix.py -i /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/tongue_only/weighted_unifrac_dm.tongue_ts_only.txt -m /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/new_smp_map_2.txt -s "Gender" -t /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/tongue_only/otu_table_even10000_tongue.ts_only.biom -o /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/tongue_only/weighted_unifrac_dm.tongue_ts_only_gender_only.txt
tongue_only_unweighted
filter_distance_matrix.py -i /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/tongue_only/unweighted_unifrac_dm.tongue_ts_only.txt -m /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/new_smp_map_2.txt -s "Gender" -t /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/tongue_only/otu_table_even10000_tongue.ts_only.biom -o /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/tongue_only/unweighted_unifrac_dm.tongue_ts_only_gender.txt
forehead_unweighted
filter_distance_matrix.py -i /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/forehead_only/unweighted_unifrac_dm.forehead_ts_only.txt -m /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/new_smp_map_2.txt -s "Gender" -t /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/forehead_only/otu_table_even10000_forehead.ts_only.biom -o /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/forehead_only/unweighted_unifrac_dm.forehead_ts_only_gender.txt
forehead_weighted
filter_distance_matrix.py -i /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/forehead_only/weighted_unifrac_dm.forehead_ts_only.txt -m /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/new_smp_map_2.txt -s "Gender" -t /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/forehead_only/otu_table_even10000_forehead.ts_only.biom -o /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/forehead_only/weighted_unifrac_dm.forehead_ts_only_gender_only.txt
gut_unweighted
filter_distance_matrix.py -i /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/gut_only/unweighted_unifrac_dm.gut_ts_only.txt -m /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/new_smp_map_2.txt -s "Gender" -t /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/gut_only/otu_table_even10000_gut.ts_only.biom -o /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/gut_only/unweighted_unifrac_dm.gut_ts_only_gender.txt
gut_weighted
filter_distance_matrix.py -i /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/gut_only/weighted_unifrac_dm.gut_ts_only.txt -m /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/new_smp_map_2.txt -s "Gender" -t /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/gut_only/otu_table_even10000_gut.ts_only.biom -o /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/gut_only/weighted_unifrac_dm.gut_ts_only_gender_only.txt
palm_weighted
filter_distance_matrix.py -i /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/palm_only/weighted_unifrac_dm.palm_ts_only.txt -m /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/new_smp_map_2.txt -s "Gender" -t /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/palm_only/otu_table_even10000_palm.ts_only.biom -o /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/palm_only/weighted_unifrac_dm.palm_ts_only_gender_only.txt
palm_unweighted
filter_distance_matrix.py -i /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/palm_only/unweighted_unifrac_dm.palm_ts_only.txt -m /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/new_smp_map_2.txt -s "Gender" -t /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/palm_only/otu_table_even10000_palm.ts_only.biom -o /Users/danieldomogala/Downloads/MacQIIME_1.6.0-20121220_OS10.6/macqiime/college_student_microbiome_1_29_13/palm_only/unweighted_unifrac_dm.palm_ts_only_gender.txt